Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001844

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
2,085,772	+		ABIE53_001843	0.49	+0.3
2,086,017	-		ABIE53_001843	0.65	-0.6
2,086,105	+		ABIE53_001843	0.71	+1.6
2,086,105	+		ABIE53_001843	0.71	+0.2
2,086,105	+		ABIE53_001843	0.71	-0.6
2,086,105	+		ABIE53_001843	0.71	+1.8
2,086,105	+		ABIE53_001843	0.71	-1.8
2,086,106	-		ABIE53_001843	0.71	+0.7
2,086,106	-		ABIE53_001843	0.71	+0.8
2,086,106	-		ABIE53_001843	0.71	-0.8
2,086,270	-		ABIE53_001843	0.82	-0.9
2,086,441	+				+1.8
2,086,549	+				-0.2
2,086,549	+				-1.1
2,086,549	+				-0.3
2,086,550	-				+0.9
2,086,554	-				-0.6
2,086,559	-				+0.5
2,086,581	-				+0.2
2,086,712	+		ABIE53_001844	0.11	-1.6
2,086,713	-		ABIE53_001844	0.11	-1.9
2,086,713	-		ABIE53_001844	0.11	-0.2
2,086,834	+		ABIE53_001844	0.25	-1.0
2,086,834	+		ABIE53_001844	0.25	-1.7
2,086,835	-		ABIE53_001844	0.25	-2.3
2,086,839	-		ABIE53_001844	0.26	-1.2
2,086,839	-		ABIE53_001844	0.26	-0.4
2,086,889	+		ABIE53_001844	0.32	+2.0
2,086,890	-		ABIE53_001844	0.32	-1.2
2,086,923	-		ABIE53_001844	0.36	-0.8
2,086,928	+		ABIE53_001844	0.36	-0.9
2,086,928	+		ABIE53_001844	0.36	-1.3
2,086,929	-		ABIE53_001844	0.36	-1.0
2,086,929	-		ABIE53_001844	0.36	-0.2
2,086,929	-		ABIE53_001844	0.36	-2.8
2,086,929	-		ABIE53_001844	0.36	-0.9
2,086,967	+		ABIE53_001844	0.41	-2.3
2,086,968	-		ABIE53_001844	0.41	-0.2
2,087,067	+		ABIE53_001844	0.53	+0.0
2,087,067	+		ABIE53_001844	0.53	-0.8
2,087,068	-		ABIE53_001844	0.53	-0.2
2,087,109	-		ABIE53_001844	0.58	-1.6
2,087,132	-		ABIE53_001844	0.60	-0.5
2,087,195	+		ABIE53_001844	0.68	-0.2
2,087,196	-		ABIE53_001844	0.68	-1.4
2,087,196	-		ABIE53_001844	0.68	-2.1
2,087,196	-		ABIE53_001844	0.68	-1.0
2,087,197	+		ABIE53_001844	0.68	+0.2
2,087,197	+		ABIE53_001844	0.68	-3.3
2,087,198	-		ABIE53_001844	0.68	-1.2
2,087,200	-		ABIE53_001844	0.69	+1.1
2,087,285	+		ABIE53_001844	0.79	-2.0
2,087,286	-		ABIE53_001844	0.79	-1.1
2,087,286	-		ABIE53_001844	0.79	-0.4
2,087,299	+		ABIE53_001844	0.80	-0.3
2,087,317	+		ABIE53_001844	0.82	-1.2
2,087,320	+		ABIE53_001844	0.83	-0.2
2,087,356	+		ABIE53_001844	0.87	-0.6
2,087,356	+		ABIE53_001844	0.87	+0.2
2,087,602	-		ABIE53_001845	0.22	+1.0
2,087,818	+				-1.2
2,087,922	+				-0.2
2,087,992	+				-1.2
2,088,010	+		ABIE53_001846	0.13	-2.1
2,088,019	+		ABIE53_001846	0.14	-0.8
2,088,071	+		ABIE53_001846	0.23	-3.4
2,088,071	+		ABIE53_001846	0.23	-1.4
2,088,071	+		ABIE53_001846	0.23	-3.1
2,088,074	+		ABIE53_001846	0.24	+0.2
2,088,121	+		ABIE53_001846	0.32	-0.6
2,088,375	+		ABIE53_001846	0.77	-2.3
2,088,427	+		ABIE53_001846	0.86	-2.9
2,088,427	+		ABIE53_001846	0.86	+0.8
2,088,454	+				-0.8