Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001556

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
1,731,894	-				-1.3
1,731,894	-				+0.6
1,732,093	+				-1.4
1,732,256	+		ABIE53_001555	0.33	+1.4
1,732,257	-		ABIE53_001555	0.33	+0.7
1,732,257	-		ABIE53_001555	0.33	-1.9
1,732,257	-		ABIE53_001555	0.33	-2.2
1,732,296	-		ABIE53_001555	0.40	-0.0
1,732,296	-		ABIE53_001555	0.40	-1.7
1,732,296	-		ABIE53_001555	0.40	-0.6
1,732,297	+		ABIE53_001555	0.40	-0.6
1,732,481	+		ABIE53_001555	0.72	+0.4
1,732,550	+		ABIE53_001555	0.84	+0.6
1,732,551	-		ABIE53_001555	0.84	-0.6
1,732,552	+		ABIE53_001555	0.84	-0.3
1,732,552	+		ABIE53_001555	0.84	+1.3
1,732,553	-		ABIE53_001555	0.84	+0.6
1,732,553	-		ABIE53_001555	0.84	-0.6
1,732,899	+				+0.4
1,732,899	+				+0.5
1,732,899	+				-0.3
1,732,899	+				+0.1
1,732,899	+				+0.2
1,732,899	+				+0.6
1,732,899	+				-1.4
1,732,900	-				-0.3
1,733,101	+		ABIE53_001556	0.11	-0.2
1,733,101	+		ABIE53_001556	0.11	-0.6
1,733,102	-		ABIE53_001556	0.11	+1.0
1,733,102	-		ABIE53_001556	0.11	+1.4
1,733,169	+		ABIE53_001556	0.13	-0.2
1,733,169	+		ABIE53_001556	0.13	+0.3
1,733,199	+		ABIE53_001556	0.14	-0.2
1,733,199	+		ABIE53_001556	0.14	-0.2
1,733,200	-		ABIE53_001556	0.14	-0.6
1,733,200	-		ABIE53_001556	0.14	-1.2
1,733,200	-		ABIE53_001556	0.14	+0.4
1,733,373	+		ABIE53_001556	0.20	-0.4
1,733,373	+		ABIE53_001556	0.20	-1.1
1,733,373	+		ABIE53_001556	0.20	-1.7
1,733,373	+		ABIE53_001556	0.20	-2.3
1,733,373	+		ABIE53_001556	0.20	-1.0
1,733,373	+		ABIE53_001556	0.20	-0.9
1,733,373	+		ABIE53_001556	0.20	-1.1
1,733,374	-		ABIE53_001556	0.20	-0.4
1,733,374	-		ABIE53_001556	0.20	-0.0
1,733,374	-		ABIE53_001556	0.20	+1.7
1,733,374	-		ABIE53_001556	0.20	+0.1
1,733,637	+		ABIE53_001556	0.29	-2.1
1,733,637	+		ABIE53_001556	0.29	-1.0
1,733,637	+		ABIE53_001556	0.29	+0.6
1,733,638	-		ABIE53_001556	0.30	-0.6
1,733,954	+		ABIE53_001556	0.40	+1.7
1,733,955	-		ABIE53_001556	0.40	+1.1
1,734,022	-		ABIE53_001556	0.43	+0.1
1,734,041	-		ABIE53_001556	0.43	-0.6
1,734,110	+		ABIE53_001556	0.46	-0.6
1,734,110	+		ABIE53_001556	0.46	+0.1
1,734,111	+		ABIE53_001556	0.46	-3.4
1,734,111	+		ABIE53_001556	0.46	-1.4
1,734,112	-		ABIE53_001556	0.46	-0.7
1,734,247	-		ABIE53_001556	0.51	-0.2
1,734,247	-		ABIE53_001556	0.51	-1.0
1,734,247	-		ABIE53_001556	0.51	+0.5
1,734,363	+		ABIE53_001556	0.55	-2.9
1,734,363	+		ABIE53_001556	0.55	-1.4
1,734,364	-		ABIE53_001556	0.55	-2.6
1,734,548	+		ABIE53_001556	0.61	-4.4
1,734,570	+		ABIE53_001556	0.62	-2.4
1,734,630	+		ABIE53_001556	0.64	+1.7
1,734,631	-		ABIE53_001556	0.64	-0.1
1,734,631	-		ABIE53_001556	0.64	-1.1
1,734,631	-		ABIE53_001556	0.64	+0.1
1,734,631	-		ABIE53_001556	0.64	-1.8
1,734,774	+		ABIE53_001556	0.69	-2.8
1,734,775	-		ABIE53_001556	0.69	-0.6
1,734,775	-		ABIE53_001556	0.69	-1.1
1,735,218	+		ABIE53_001556	0.84	-2.0
1,735,219	-		ABIE53_001556	0.84	+0.1
1,735,487	+				-2.4
1,735,487	+				-1.3
1,735,488	-				-1.8
1,735,521	-				-0.3
1,735,969	+		ABIE53_001557	0.43	-0.9
1,735,969	+		ABIE53_001557	0.43	-0.9
1,735,969	+		ABIE53_001557	0.43	+0.5
1,735,969	+		ABIE53_001557	0.43	+2.7
1,735,970	-		ABIE53_001557	0.43	-0.3
1,735,970	-		ABIE53_001557	0.43	-1.9
1,736,245	+		ABIE53_001557	0.83	+1.1
1,736,245	+		ABIE53_001557	0.83	-1.0
1,736,245	+		ABIE53_001557	0.83	-0.3
1,736,246	-		ABIE53_001557	0.83	-0.4
1,736,246	-		ABIE53_001557	0.83	-0.5
1,736,246	-		ABIE53_001557	0.83	+0.7
1,736,246	-		ABIE53_001557	0.83	-0.7
1,736,246	-		ABIE53_001557	0.83	-0.4
1,736,246	-		ABIE53_001557	0.83	+0.9
1,736,246	-		ABIE53_001557	0.83	-1.0
1,736,246	-		ABIE53_001557	0.83	-1.0
1,736,246	-		ABIE53_001557	0.83	-0.2
1,736,246	-		ABIE53_001557	0.83	-1.4
1,736,246	-		ABIE53_001557	0.83	+1.7
1,736,246	-		ABIE53_001557	0.83	-0.1
1,736,246	-		ABIE53_001557	0.83	+1.6
1,736,251	+		ABIE53_001557	0.84	-1.1
1,736,251	+		ABIE53_001557	0.84	+0.4
1,736,251	+		ABIE53_001557	0.84	-1.3
1,736,251	+		ABIE53_001557	0.84	-0.3
1,736,251	+		ABIE53_001557	0.84	-0.3
1,736,251	+		ABIE53_001557	0.84	-0.5
1,736,252	-		ABIE53_001557	0.84	-1.7
1,736,252	-		ABIE53_001557	0.84	+0.8
1,736,263	+		ABIE53_001557	0.85	-0.0
1,736,263	+		ABIE53_001557	0.85	-1.3
1,736,263	+		ABIE53_001557	0.85	-1.3
1,736,263	+		ABIE53_001557	0.85	-1.2
1,736,263	+		ABIE53_001557	0.85	-1.9
1,736,264	-		ABIE53_001557	0.86	-0.0
1,736,264	-		ABIE53_001557	0.86	-0.7
1,736,264	-		ABIE53_001557	0.86	-0.4
1,736,264	-		ABIE53_001557	0.86	+0.2
1,736,316	+				-2.5
1,736,316	+				+1.1
1,736,316	+				+1.3
1,736,317	-				+1.1
1,736,317	-				-1.0
1,736,411	+				+0.6
1,736,411	+				-1.4
1,736,412	-				-1.3
1,736,412	-				-2.5
1,736,413	+				-1.7
1,736,413	+				+0.2
1,736,414	-				-1.4
1,736,414	-				-2.8
1,736,414	-				-0.4
1,736,417	+				-0.7
1,736,417	+				-0.6
1,736,417	+				-0.2
1,736,418	-				-1.3
1,736,419	-				-0.6
1,736,427	-				-0.5
1,736,438	+				-1.6
1,736,438	+				-0.9
1,736,438	+				-0.2
1,736,438	+				-1.4
1,736,439	-				+0.4
1,736,439	-				-1.9
1,736,439	-				+0.7
1,736,439	-				-2.4
1,736,447	+				-0.3
1,736,447	+				+0.4
1,736,447	+				-1.4
1,736,447	+				-1.0
1,736,447	+				-0.3
1,736,447	+				+1.0
1,736,447	+				-1.2
1,736,448	-				-0.5
1,736,448	-				-0.9
1,736,448	-				-2.0
1,736,616	-		ABIE53_001558	0.40	-0.5