Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000856 and ABIE53_000857 are separated by 76 nucleotides ABIE53_000857 and ABIE53_000858 are separated by 318 nucleotides
ABIE53_000856: ABIE53_000856 - DNA repair protein RecN (Recombination protein N), at 932,649 to 934,319
_000856
ABIE53_000857: ABIE53_000857 - NAD+ kinase, at 934,396 to 935,298
_000857
ABIE53_000858: ABIE53_000858 - heat-inducible transcriptional repressor, at 935,617 to 936,636
_000858
Position (kb) 934
935
936 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 933.448 kb on + strand, within ABIE53_000856 at 933.448 kb on + strand, within ABIE53_000856 at 933.448 kb on + strand, within ABIE53_000856 at 933.463 kb on + strand, within ABIE53_000856 at 933.463 kb on + strand, within ABIE53_000856 at 933.463 kb on + strand, within ABIE53_000856 at 933.464 kb on - strand, within ABIE53_000856 at 933.464 kb on - strand, within ABIE53_000856 at 933.464 kb on - strand, within ABIE53_000856 at 933.464 kb on - strand, within ABIE53_000856 at 933.926 kb on + strand, within ABIE53_000856 at 933.926 kb on + strand, within ABIE53_000856 at 933.927 kb on - strand, within ABIE53_000856 at 933.927 kb on - strand, within ABIE53_000856 at 933.927 kb on - strand, within ABIE53_000856 at 934.247 kb on + strand at 934.361 kb on + strand at 934.361 kb on + strand at 934.361 kb on + strand at 934.362 kb on - strand at 934.362 kb on - strand at 934.362 kb on - strand at 934.362 kb on - strand at 934.427 kb on + strand at 935.291 kb on - strand at 935.291 kb on - strand at 935.291 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.308 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.315 kb on - strand at 935.318 kb on + strand at 935.319 kb on - strand at 935.319 kb on - strand at 935.319 kb on - strand at 935.319 kb on - strand at 935.319 kb on - strand at 935.391 kb on + strand at 935.392 kb on - strand at 935.392 kb on - strand at 935.392 kb on - strand at 935.392 kb on - strand at 935.397 kb on + strand at 935.397 kb on + strand at 935.397 kb on + strand at 935.397 kb on + strand at 935.397 kb on + strand at 935.398 kb on - strand at 935.398 kb on - strand at 935.398 kb on - strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.621 kb on + strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.622 kb on - strand at 935.665 kb on + strand at 935.665 kb on + strand at 935.665 kb on + strand at 935.665 kb on + strand at 935.665 kb on + strand at 935.665 kb on + strand at 935.666 kb on - strand at 935.666 kb on - strand at 935.711 kb on - strand at 935.793 kb on + strand, within ABIE53_000858 at 935.793 kb on + strand, within ABIE53_000858 at 935.793 kb on + strand, within ABIE53_000858 at 935.793 kb on + strand, within ABIE53_000858 at 935.794 kb on - strand, within ABIE53_000858 at 935.794 kb on - strand, within ABIE53_000858 at 935.794 kb on - strand, within ABIE53_000858 at 935.814 kb on + strand, within ABIE53_000858 at 935.814 kb on + strand, within ABIE53_000858 at 935.814 kb on + strand, within ABIE53_000858 at 935.815 kb on - strand, within ABIE53_000858 at 935.815 kb on - strand, within ABIE53_000858 at 935.904 kb on + strand, within ABIE53_000858 at 935.904 kb on + strand, within ABIE53_000858 at 935.904 kb on + strand, within ABIE53_000858 at 935.905 kb on - strand, within ABIE53_000858 at 935.905 kb on - strand, within ABIE53_000858 at 935.905 kb on - strand, within ABIE53_000858 at 935.905 kb on - strand, within ABIE53_000858 at 936.151 kb on + strand, within ABIE53_000858 at 936.151 kb on + strand, within ABIE53_000858 at 936.151 kb on + strand, within ABIE53_000858 at 936.151 kb on + strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858 at 936.152 kb on - strand, within ABIE53_000858
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM remove 933,448 + ABIE53_000856 0.48 +0.1 933,448 + ABIE53_000856 0.48 -0.9 933,448 + ABIE53_000856 0.48 -0.4 933,463 + ABIE53_000856 0.49 -1.5 933,463 + ABIE53_000856 0.49 -2.5 933,463 + ABIE53_000856 0.49 -1.8 933,464 - ABIE53_000856 0.49 -3.2 933,464 - ABIE53_000856 0.49 -0.1 933,464 - ABIE53_000856 0.49 +0.1 933,464 - ABIE53_000856 0.49 -0.1 933,926 + ABIE53_000856 0.76 -1.2 933,926 + ABIE53_000856 0.76 -1.0 933,927 - ABIE53_000856 0.76 +2.0 933,927 - ABIE53_000856 0.76 -0.4 933,927 - ABIE53_000856 0.76 -1.1 934,247 + -0.1 934,361 + +1.0 934,361 + +1.2 934,361 + -2.6 934,362 - +0.5 934,362 - +0.5 934,362 - -1.5 934,362 - -0.9 934,427 + -1.8 935,291 - -2.4 935,291 - -2.5 935,291 - -0.9 935,308 - -0.6 935,308 - -0.7 935,308 - +0.2 935,308 - -2.0 935,308 - +0.2 935,308 - -0.4 935,308 - -2.6 935,308 - -1.8 935,308 - -0.2 935,308 - +1.6 935,315 - +1.8 935,315 - -0.5 935,315 - +0.8 935,315 - +0.1 935,315 - -0.8 935,315 - -3.6 935,315 - -1.0 935,315 - +0.6 935,315 - -0.9 935,315 - -1.5 935,315 - +0.0 935,315 - +2.7 935,315 - -1.1 935,315 - -0.4 935,315 - +1.6 935,315 - +1.8 935,315 - +0.3 935,315 - -0.8 935,315 - +1.1 935,315 - +0.5 935,315 - +0.5 935,315 - +0.0 935,315 - +0.0 935,315 - +0.5 935,315 - +1.0 935,315 - +3.1 935,315 - +0.4 935,315 - -1.0 935,315 - +0.4 935,315 - -3.4 935,315 - -2.4 935,315 - +0.6 935,315 - -2.8 935,315 - +0.1 935,315 - -0.5 935,315 - +0.8 935,318 + -1.4 935,319 - -0.7 935,319 - +0.6 935,319 - -1.5 935,319 - +0.0 935,319 - +1.2 935,391 + +0.5 935,392 - -0.0 935,392 - -0.4 935,392 - -0.2 935,392 - -0.4 935,397 + -0.7 935,397 + -1.2 935,397 + -0.3 935,397 + -2.4 935,397 + +2.6 935,398 - -1.4 935,398 - -0.1 935,398 - -1.2 935,621 + -2.8 935,621 + -2.4 935,621 + -1.8 935,621 + -3.0 935,621 + -3.0 935,621 + +2.0 935,621 + +0.6 935,621 + -2.2 935,621 + -1.5 935,622 - -2.2 935,622 - -0.7 935,622 - -3.0 935,622 - -3.7 935,622 - -1.0 935,622 - -1.4 935,622 - +0.6 935,622 - -1.7 935,622 - -1.7 935,622 - -2.7 935,665 + -1.0 935,665 + -3.0 935,665 + -2.6 935,665 + -4.1 935,665 + -1.7 935,665 + -3.1 935,666 - -0.7 935,666 - +0.0 935,711 - +0.0 935,793 + ABIE53_000858 0.17 -3.1 935,793 + ABIE53_000858 0.17 -0.4 935,793 + ABIE53_000858 0.17 -2.1 935,793 + ABIE53_000858 0.17 -1.4 935,794 - ABIE53_000858 0.17 -2.0 935,794 - ABIE53_000858 0.17 -1.4 935,794 - ABIE53_000858 0.17 -0.7 935,814 + ABIE53_000858 0.19 -3.5 935,814 + ABIE53_000858 0.19 -1.4 935,814 + ABIE53_000858 0.19 -3.7 935,815 - ABIE53_000858 0.19 -3.6 935,815 - ABIE53_000858 0.19 -3.1 935,904 + ABIE53_000858 0.28 -1.2 935,904 + ABIE53_000858 0.28 +2.2 935,904 + ABIE53_000858 0.28 -1.8 935,905 - ABIE53_000858 0.28 -3.7 935,905 - ABIE53_000858 0.28 -1.8 935,905 - ABIE53_000858 0.28 -2.4 935,905 - ABIE53_000858 0.28 -1.5 936,151 + ABIE53_000858 0.52 -1.2 936,151 + ABIE53_000858 0.52 -2.9 936,151 + ABIE53_000858 0.52 -1.5 936,151 + ABIE53_000858 0.52 -0.4 936,152 - ABIE53_000858 0.52 -2.4 936,152 - ABIE53_000858 0.52 -1.0 936,152 - ABIE53_000858 0.52 -1.5 936,152 - ABIE53_000858 0.52 -2.9 936,152 - ABIE53_000858 0.52 -1.8 936,152 - ABIE53_000858 0.52 -1.2 936,152 - ABIE53_000858 0.52 -1.4 936,152 - ABIE53_000858 0.52 +0.0
Or see this region's nucleotide sequence