Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000406

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000405 and ABIE53_000406 are separated by 377 nucleotidesABIE53_000406 and ABIE53_000407 are separated by 217 nucleotides ABIE53_000405: ABIE53_000405 - rod shape-determining protein MreB, at 437,506 to 438,549 _000405 ABIE53_000406: ABIE53_000406 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C, at 438,927 to 439,226 _000406 ABIE53_000407: ABIE53_000407 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 439,444 to 440,931 _000407 Position (kb) 438 439 440Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 438.672 kb on - strandat 438.672 kb on - strandat 438.685 kb on - strandat 438.685 kb on - strandat 438.685 kb on - strandat 438.704 kb on - strandat 438.704 kb on - strandat 438.719 kb on - strandat 438.719 kb on - strandat 438.744 kb on - strandat 438.744 kb on - strandat 438.744 kb on - strandat 438.784 kb on - strandat 438.784 kb on - strandat 438.785 kb on + strandat 438.785 kb on + strandat 438.785 kb on + strandat 439.224 kb on + strandat 439.335 kb on + strandat 439.335 kb on + strandat 439.335 kb on + strandat 439.347 kb on + strandat 439.347 kb on + strandat 439.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
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438,672 - -0.5
438,672 - -1.5
438,685 - +1.5
438,685 - +1.1
438,685 - -0.5
438,704 - -0.3
438,704 - -1.2
438,719 - +0.1
438,719 - -2.1
438,744 - -0.6
438,744 - -1.5
438,744 - -1.1
438,784 - -1.9
438,784 - -1.1
438,785 + -1.9
438,785 + -0.5
438,785 + -4.1
439,224 + +0.1
439,335 + -0.8
439,335 + +0.8
439,335 + -0.5
439,347 + -0.1
439,347 + +0.1
439,347 + -0.9

Or see this region's nucleotide sequence