Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3543

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
4,579,439	-		BT3542	0.28	-0.0
4,579,443	-		BT3542	0.28	-0.2
4,579,443	-		BT3542	0.28	+0.1
4,579,520	+		BT3542	0.34	+0.6
4,579,521	-		BT3542	0.35	-0.6
4,579,521	-		BT3542	0.35	-1.3
4,579,521	-		BT3542	0.35	-0.6
4,579,596	-		BT3542	0.41	-3.0
4,579,702	-		BT3542	0.50	-0.8
4,579,702	-		BT3542	0.50	+0.1
4,579,702	-		BT3542	0.50	-0.8
4,579,728	+		BT3542	0.52	+0.2
4,579,763	-		BT3542	0.55	-2.9
4,579,843	-		BT3542	0.61	-2.5
4,579,843	-		BT3542	0.61	-0.9
4,579,845	-		BT3542	0.62	-0.3
4,579,867	-		BT3542	0.63	-0.6
4,579,870	-		BT3542	0.64	-1.4
4,579,891	-		BT3542	0.65	+0.4
4,579,914	-		BT3542	0.67	-0.2
4,579,921	-		BT3542	0.68	-1.2
4,579,927	-		BT3542	0.68	-0.7
4,579,929	-		BT3542	0.68	-0.5
4,579,969	+		BT3542	0.72	-0.5
4,579,972	-		BT3542	0.72	-0.3
4,579,972	-		BT3542	0.72	-1.6
4,580,012	-		BT3542	0.75	+0.2
4,580,101	-		BT3542	0.83	-0.7
4,580,105	-		BT3542	0.83	-0.3
4,580,105	-		BT3542	0.83	-0.7
4,580,105	-		BT3542	0.83	-1.3
4,580,133	-		BT3542	0.85	+0.5
4,580,138	-		BT3542	0.86	-1.3
4,580,204	-				+0.6
4,580,204	-				-0.7
4,580,242	-				-2.3
4,580,259	-				-0.9
4,580,281	-				-1.8
4,580,340	-				-0.5
4,580,474	-				-0.6
4,580,488	+				-0.8
4,580,500	+				-0.8
4,580,517	-		BT3543	0.11	-0.8
4,580,543	+		BT3543	0.14	-0.8
4,580,544	-		BT3543	0.15	-0.0
4,580,544	-		BT3543	0.15	-1.3
4,580,578	+		BT3543	0.19	+1.1
4,580,616	-		BT3543	0.24	-0.2
4,580,687	+		BT3543	0.34	+1.0
4,580,730	-		BT3543	0.40	-0.2
4,580,730	-		BT3543	0.40	-0.0
4,580,739	-		BT3543	0.41	-0.4
4,580,748	+		BT3543	0.43	+1.4
4,580,749	-		BT3543	0.43	+0.0
4,580,749	-		BT3543	0.43	-0.5
4,580,751	-		BT3543	0.43	+1.1
4,580,795	-		BT3543	0.49	+1.0
4,580,841	-		BT3543	0.56	-0.2
4,580,841	-		BT3543	0.56	+2.1
4,580,892	-		BT3543	0.63	+0.2
4,580,903	+		BT3543	0.64	-2.4
4,580,903	+		BT3543	0.64	-0.5
4,580,955	-		BT3543	0.71	-1.8
4,580,958	-		BT3543	0.72	-1.6
4,580,976	-		BT3543	0.74	+0.1
4,580,980	-		BT3543	0.75	-2.9
4,580,991	+		BT3543	0.76	-2.4
4,581,017	-		BT3543	0.80	-1.6
4,581,023	+		BT3543	0.81	+0.5
4,581,062	-		BT3543	0.86	-0.8
4,581,099	+				-0.2
4,581,100	-				-1.6
4,581,100	-				-1.8
4,581,122	+				-1.3
4,581,150	-				-0.6
4,581,169	-				+0.1
4,581,172	-				-0.3
4,581,176	+				-2.4
4,581,185	-				-0.3
4,581,191	-		BT3544	0.11	-1.2
4,581,270	+		BT3544	0.41	-3.4
4,581,300	+		BT3544	0.53	-1.5
4,581,301	-		BT3544	0.53	+3.0
4,581,303	-		BT3544	0.54	-0.7
4,581,312	-		BT3544	0.57	-0.3
4,581,346	-		BT3544	0.70	-0.3
4,581,414	-				-1.9
4,581,473	-				-1.0
4,581,494	+				-0.0
4,581,495	-				+0.6
4,581,498	+				-0.3
4,581,513	-				-0.4
4,581,529	+				-0.7
4,581,579	-				-0.8
4,581,605	-				-0.9
4,581,624	-				-1.2
4,581,626	-				-0.1
4,581,626	-				-0.5
4,581,655	-				+0.2
4,581,676	-		BT3545	0.10	-0.4
4,581,722	-		BT3545	0.13	+0.7
4,581,722	-		BT3545	0.13	-1.4
4,581,751	-		BT3545	0.15	-1.5
4,581,751	-		BT3545	0.15	-0.3
4,581,751	-		BT3545	0.15	-0.0
4,581,773	-		BT3545	0.16	-2.1
4,581,776	-		BT3545	0.16	+0.1
4,581,777	+		BT3545	0.16	-0.5
4,581,798	-		BT3545	0.18	-1.6
4,581,904	-		BT3545	0.24	-0.4
4,581,909	-		BT3545	0.25	+0.1
4,581,913	-		BT3545	0.25	-0.9
4,581,913	-		BT3545	0.25	-0.6
4,581,913	-		BT3545	0.25	-1.8
4,581,913	-		BT3545	0.25	+0.4
4,581,913	-		BT3545	0.25	+0.3
4,581,931	+		BT3545	0.26	+0.5
4,581,980	-		BT3545	0.29	-1.8
4,581,994	-		BT3545	0.30	+0.6
4,582,002	+		BT3545	0.31	-2.0
4,582,047	+		BT3545	0.33	-1.0
4,582,053	+		BT3545	0.34	-1.6
4,582,058	-		BT3545	0.34	-2.3
4,582,072	-		BT3545	0.35	+0.6
4,582,118	-		BT3545	0.38	-0.5
4,582,143	+		BT3545	0.39	+0.6