Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3153

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
4,016,237	+		BT3152	0.41	-0.7
4,016,253	+		BT3152	0.42	+0.3
4,016,289	+		BT3152	0.44	-0.7
4,016,290	-		BT3152	0.45	-0.6
4,016,290	-		BT3152	0.45	-0.4
4,016,290	-		BT3152	0.45	+1.0
4,016,290	-		BT3152	0.45	+0.2
4,016,293	+		BT3152	0.45	-1.2
4,016,313	-		BT3152	0.46	-0.8
4,016,319	+		BT3152	0.46	+0.2
4,016,320	-		BT3152	0.46	+0.2
4,016,320	-		BT3152	0.46	-1.0
4,016,327	+		BT3152	0.47	-0.1
4,016,453	+		BT3152	0.55	-1.1
4,016,454	-		BT3152	0.55	-0.6
4,016,524	+		BT3152	0.60	-1.7
4,016,524	+		BT3152	0.60	-1.2
4,016,552	-		BT3152	0.62	-0.5
4,016,613	+		BT3152	0.66	+0.2
4,016,766	+		BT3152	0.76	-1.0
4,016,794	+		BT3152	0.77	-2.3
4,016,817	-		BT3152	0.79	-1.2
4,016,827	-		BT3152	0.79	+0.8
4,016,845	-		BT3152	0.81	-0.7
4,016,880	+		BT3152	0.83	+0.3
4,016,884	+		BT3152	0.83	-0.6
4,016,884	+		BT3152	0.83	-1.2
4,016,884	+		BT3152	0.83	-2.0
4,016,953	+		BT3152	0.88	+0.2
4,016,998	+				-0.0
4,017,000	+				-1.2
4,017,001	-				-0.2
4,017,007	+				+0.6
4,017,007	+				+0.1
4,017,007	+				-0.1
4,017,030	+				-0.8
4,017,058	-				-0.8
4,017,062	+				-2.7
4,017,062	+				-1.5
4,017,127	+				-0.8
4,017,129	+				-0.1
4,017,129	+				-1.1
4,017,129	+				-1.3
4,017,130	-				+0.5
4,017,158	+				-2.3
4,017,204	+		BT3153	0.19	+0.8
4,017,207	+		BT3153	0.20	+0.5
4,017,249	-		BT3153	0.32	+0.9
4,017,353	+		BT3153	0.62	-0.5
4,017,356	+		BT3153	0.63	-0.7
4,017,357	-		BT3153	0.63	-0.1
4,017,358	+				-1.0
4,017,358	+		BT3153	0.64	-0.3
4,017,360	+		BT3153	0.64	+0.7
4,017,363	-		BT3153	0.65	-0.3
4,017,364	+		BT3153	0.66	-0.3
4,017,365	-		BT3153	0.66	+1.9
4,017,365	-		BT3153	0.66	-0.0
4,017,377	+		BT3153	0.69	-0.6
4,017,547	+				-0.5
4,017,548	-				-0.2
4,017,617	-				-0.6
4,017,621	-				+0.4
4,017,624	+				+0.2
4,017,625	-				-1.2
4,017,630	-				-1.0
4,017,751	+		BT3154	0.19	+0.5
4,017,754	+		BT3154	0.20	-0.7
4,017,754	+		BT3154	0.20	-0.1
4,017,755	-		BT3154	0.20	-1.0
4,017,755	-		BT3154	0.20	+0.0
4,017,755	-		BT3154	0.20	+0.0
4,017,755	-		BT3154	0.20	+2.3
4,017,761	-		BT3154	0.22	-1.3
4,017,850	+		BT3154	0.49	+1.9
4,017,858	+		BT3154	0.52	-0.2
4,017,858	+		BT3154	0.52	+0.9
4,017,859	-		BT3154	0.52	-0.4
4,017,862	+		BT3154	0.53	-1.3
4,017,863	-		BT3154	0.53	+0.0
4,017,881	+		BT3154	0.59	+0.3
4,017,887	-		BT3154	0.61	-0.1
4,017,896	+		BT3154	0.63	+0.6
4,017,961	+		BT3154	0.83	-0.7
4,017,962	-		BT3154	0.83	-0.2
4,017,966	-		BT3154	0.85	+0.3
4,017,999	-				-0.3
4,018,022	+				+1.4
4,018,023	-				-2.0
4,018,032	-				+0.0
4,018,034	-				-1.4
4,018,053	+				-0.7
4,018,056	-				-1.4
4,018,070	+				+1.0
4,018,073	-				+0.8
4,018,075	-				+0.6
4,018,075	-				+0.1
4,018,105	+				-2.2
4,018,141	+				-0.3
4,018,141	+				+0.1
4,018,141	+				-0.8
4,018,143	+				-1.5
4,018,143	+				-1.4
4,018,144	-				-0.7
4,018,172	+				-0.9
4,018,177	+				+0.0
4,018,226	+				+0.8
4,018,231	-				+0.0
4,018,236	+				-1.7
4,018,237	-				-0.7
4,018,348	+				-0.5
4,018,358	+				+0.0
4,018,457	+		BT3155	0.11	+0.6