Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2585

Experiment: Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml
3,227,201	-		BT2583	0.88	-1.5
3,227,226	+				-0.9
3,227,227	-				-0.8
3,227,227	-				-0.3
3,227,312	-				-0.5
3,227,331	-				-2.0
3,227,331	-				-0.4
3,227,355	-				-0.7
3,227,366	+				+0.3
3,227,437	-		BT2584	0.16	-0.8
3,227,439	-		BT2584	0.16	-0.3
3,227,459	+		BT2584	0.19	+0.7
3,227,494	-		BT2584	0.23	+0.2
3,227,696	-		BT2584	0.48	-2.0
3,227,706	-		BT2584	0.49	+0.2
3,227,754	+		BT2584	0.55	-0.5
3,227,783	+		BT2584	0.58	+0.6
3,227,783	+		BT2584	0.58	+0.2
3,227,783	+		BT2584	0.58	-2.6
3,227,784	-		BT2584	0.58	-0.7
3,227,992	-		BT2584	0.84	-1.6
3,227,997	-		BT2584	0.84	-1.4
3,228,083	-				-0.9
3,228,125	+				-1.2
3,228,126	-				-1.6
3,228,166	+				-0.3
3,228,166	+				-1.2
3,228,167	-				+0.3
3,228,167	-				-0.5
3,228,184	+		BT2585	0.15	-2.4
3,228,185	-		BT2585	0.16	-1.9
3,228,213	-		BT2585	0.25	-1.6
3,228,213	-		BT2585	0.25	-2.3
3,228,213	-		BT2585	0.25	-0.1
3,228,393	-		BT2585	0.86	-1.9
3,228,422	+				-1.9
3,228,431	-				-0.7
3,228,458	+				-0.5
3,228,463	+				-1.0
3,228,464	-				+2.5
3,228,529	+		BT2586	0.17	-2.8
3,228,663	+		BT2586	0.43	-2.3
3,228,664	-		BT2586	0.43	-1.1
3,228,674	-		BT2586	0.45	-2.0
3,228,674	-		BT2586	0.45	-1.5
3,228,707	-		BT2586	0.52	-1.8
3,228,785	-		BT2586	0.67	-0.4
3,229,129	+				-0.6
3,229,159	+				-0.8
3,229,159	+				-1.8
3,229,159	+				-1.6
3,229,159	+				-1.5
3,229,160	-				-0.7
3,229,160	-				-0.1
3,229,160	-				+0.2
3,229,160	-				+0.4
3,229,160	-				+0.1
3,229,215	-				+0.1
3,229,270	-				+0.1
3,229,305	-		BT2587	0.13	-0.3
3,229,309	-		BT2587	0.13	-0.3
3,229,410	+		BT2587	0.24	-0.5
3,229,410	+		BT2587	0.24	-1.5
3,229,419	+		BT2587	0.25	-0.8
3,229,420	-		BT2587	0.25	-1.2
3,229,420	-		BT2587	0.25	+0.8
3,229,420	-		BT2587	0.25	-2.0
3,229,420	-		BT2587	0.25	+2.1
3,229,421	+		BT2587	0.25	-0.3
3,229,421	+		BT2587	0.25	-1.5
3,229,421	+		BT2587	0.25	-0.7
3,229,423	+		BT2587	0.25	-1.9
3,229,423	+		BT2587	0.25	-1.5
3,229,423	+		BT2587	0.25	-1.0