Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10350

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10345 and HSERO_RS10350 are separated by 226 nucleotidesHSERO_RS10350 and HSERO_RS10355 are separated by 78 nucleotides HSERO_RS10345: HSERO_RS10345 - flagellar hook protein, at 2,328,534 to 2,330,606 _RS10345 HSERO_RS10350: HSERO_RS10350 - flagellin, at 2,330,833 to 2,331,192 _RS10350 HSERO_RS10355: HSERO_RS10355 - flagellin, at 2,331,271 to 2,332,359 _RS10355 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -1 0 1 2at 2330.660 kb on + strandat 2330.908 kb on + strandat 2331.125 kb on + strand, within HSERO_RS10350at 2331.215 kb on - strandat 2331.627 kb on - strand, within HSERO_RS10355at 2331.700 kb on + strand, within HSERO_RS10355at 2332.189 kb on - strand, within HSERO_RS10355at 2332.189 kb on - strand, within HSERO_RS10355at 2332.189 kb on - strand, within HSERO_RS10355

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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2,330,660 + +0.0
2,330,908 + -0.6
2,331,125 + HSERO_RS10350 0.81 -0.6
2,331,215 - -1.4
2,331,627 - HSERO_RS10355 0.33 +2.1
2,331,700 + HSERO_RS10355 0.39 -0.6
2,332,189 - HSERO_RS10355 0.84 +0.4
2,332,189 - HSERO_RS10355 0.84 +0.3
2,332,189 - HSERO_RS10355 0.84 +0.3

Or see this region's nucleotide sequence