Experiment: R2A with Vogels_fungal_media 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03815 and HSERO_RS03820 overlap by 4 nucleotides HSERO_RS03820 and HSERO_RS03825 are separated by 38 nucleotides HSERO_RS03825 and HSERO_RS03830 are separated by 68 nucleotides
HSERO_RS03815: HSERO_RS03815 - type VI secretion protein, at 841,882 to 844,830
_RS03815
HSERO_RS03820: HSERO_RS03820 - hypothetical protein, at 844,827 to 845,765
_RS03820
HSERO_RS03825: HSERO_RS03825 - hypothetical protein, at 845,804 to 846,247
_RS03825
HSERO_RS03830: HSERO_RS03830 - hypothetical protein, at 846,316 to 846,759
_RS03830
Position (kb) 845
846
847 Strain fitness (log2 ratio) -1
0
1 at 844.925 kb on + strand, within HSERO_RS03820 at 844.967 kb on - strand, within HSERO_RS03820 at 845.053 kb on - strand, within HSERO_RS03820 at 845.059 kb on + strand, within HSERO_RS03820 at 845.365 kb on - strand, within HSERO_RS03820 at 845.508 kb on + strand, within HSERO_RS03820 at 845.561 kb on - strand, within HSERO_RS03820 at 845.703 kb on + strand at 845.716 kb on - strand at 845.801 kb on + strand at 845.879 kb on + strand, within HSERO_RS03825 at 845.884 kb on + strand, within HSERO_RS03825 at 846.097 kb on - strand, within HSERO_RS03825 at 846.179 kb on + strand, within HSERO_RS03825 at 846.346 kb on + strand at 846.359 kb on - strand at 846.380 kb on - strand, within HSERO_RS03830 at 846.575 kb on + strand, within HSERO_RS03830 at 846.583 kb on - strand, within HSERO_RS03830 at 846.610 kb on + strand, within HSERO_RS03830 at 846.693 kb on + strand, within HSERO_RS03830 at 846.701 kb on + strand, within HSERO_RS03830 at 846.711 kb on - strand, within HSERO_RS03830 at 846.711 kb on - strand, within HSERO_RS03830 at 846.775 kb on - strand at 847.011 kb on - strand at 847.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X remove 844,925 + HSERO_RS03820 0.10 -0.4 844,967 - HSERO_RS03820 0.15 -0.9 845,053 - HSERO_RS03820 0.24 +0.3 845,059 + HSERO_RS03820 0.25 +1.0 845,365 - HSERO_RS03820 0.57 +0.7 845,508 + HSERO_RS03820 0.73 -0.9 845,561 - HSERO_RS03820 0.78 -0.0 845,703 + -0.5 845,716 - +0.3 845,801 + +0.1 845,879 + HSERO_RS03825 0.17 -1.2 845,884 + HSERO_RS03825 0.18 -0.7 846,097 - HSERO_RS03825 0.66 +0.0 846,179 + HSERO_RS03825 0.84 -0.1 846,346 + +0.3 846,359 - -0.2 846,380 - HSERO_RS03830 0.14 -0.1 846,575 + HSERO_RS03830 0.58 +0.3 846,583 - HSERO_RS03830 0.60 +1.3 846,610 + HSERO_RS03830 0.66 -0.8 846,693 + HSERO_RS03830 0.85 +0.1 846,701 + HSERO_RS03830 0.87 -0.2 846,711 - HSERO_RS03830 0.89 -0.1 846,711 - HSERO_RS03830 0.89 -0.2 846,775 - +0.3 847,011 - +0.3 847,175 - +0.4
Or see this region's nucleotide sequence