Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004747 and ABIE53_004748 are separated by 35 nucleotides ABIE53_004748 and ABIE53_004749 are separated by 130 nucleotides
ABIE53_004747: ABIE53_004747 - hypothetical protein, at 946,826 to 950,689
_004747
ABIE53_004748: ABIE53_004748 - GntR family transcriptional regulator/MocR family aminotransferase, at 950,725 to 952,275
_004748
ABIE53_004749: ABIE53_004749 - putative spermidine/putrescine transport system ATP-binding protein, at 952,406 to 953,524
_004749
Position (kb) 950
951
952
953 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 949.782 kb on - strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 950.300 kb on + strand, within ABIE53_004747 at 950.301 kb on - strand, within ABIE53_004747 at 950.301 kb on - strand, within ABIE53_004747 at 950.396 kb on + strand at 950.396 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.420 kb on + strand at 950.420 kb on + strand at 950.421 kb on - strand at 950.421 kb on - strand at 950.421 kb on - strand at 950.576 kb on + strand at 950.576 kb on + strand at 950.577 kb on - strand at 950.662 kb on + strand at 950.663 kb on - strand at 950.663 kb on - strand at 950.691 kb on + strand at 950.691 kb on + strand at 950.692 kb on - strand at 950.692 kb on - strand at 950.713 kb on + strand at 950.714 kb on - strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.867 kb on + strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 951.047 kb on + strand, within ABIE53_004748 at 951.141 kb on - strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.169 kb on - strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.245 kb on + strand, within ABIE53_004748 at 951.245 kb on + strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.321 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.475 kb on - strand, within ABIE53_004748 at 951.475 kb on - strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.549 kb on - strand, within ABIE53_004748 at 951.625 kb on - strand, within ABIE53_004748 at 951.630 kb on + strand, within ABIE53_004748 at 951.630 kb on + strand, within ABIE53_004748 at 951.631 kb on - strand, within ABIE53_004748 at 951.683 kb on + strand, within ABIE53_004748 at 951.683 kb on + strand, within ABIE53_004748 at 951.684 kb on - strand, within ABIE53_004748 at 951.730 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.095 kb on + strand, within ABIE53_004748 at 952.096 kb on - strand, within ABIE53_004748 at 952.209 kb on - strand at 952.269 kb on + strand at 952.270 kb on - strand at 952.308 kb on + strand at 952.308 kb on + strand at 952.309 kb on - strand at 952.313 kb on + strand at 952.313 kb on + strand at 952.314 kb on - strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.331 kb on + strand at 952.331 kb on + strand at 952.331 kb on + strand at 952.332 kb on - strand at 952.364 kb on + strand at 952.365 kb on - strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.400 kb on - strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.671 kb on - strand, within ABIE53_004749 at 952.671 kb on - strand, within ABIE53_004749 at 952.940 kb on + strand, within ABIE53_004749 at 952.940 kb on + strand, within ABIE53_004749 at 952.985 kb on + strand, within ABIE53_004749 at 952.985 kb on + strand, within ABIE53_004749 at 952.986 kb on - strand, within ABIE53_004749 at 953.069 kb on - strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.161 kb on - strand, within ABIE53_004749
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM remove 949,782 - ABIE53_004747 0.77 +0.3 949,793 + ABIE53_004747 0.77 -1.7 949,793 + ABIE53_004747 0.77 -2.0 949,793 + ABIE53_004747 0.77 -0.4 949,793 + ABIE53_004747 0.77 +1.5 949,793 + ABIE53_004747 0.77 -0.4 949,793 + ABIE53_004747 0.77 -1.6 949,841 + ABIE53_004747 0.78 +0.4 949,841 + ABIE53_004747 0.78 -0.1 949,841 + ABIE53_004747 0.78 -0.8 949,842 - ABIE53_004747 0.78 -0.4 949,842 - ABIE53_004747 0.78 -0.8 949,842 - ABIE53_004747 0.78 +0.4 949,842 - ABIE53_004747 0.78 +1.3 949,842 - ABIE53_004747 0.78 -1.6 950,300 + ABIE53_004747 0.90 -0.5 950,301 - ABIE53_004747 0.90 -0.4 950,301 - ABIE53_004747 0.90 -0.4 950,396 + +1.9 950,396 + +1.6 950,405 + -0.5 950,405 + -1.8 950,405 + +1.3 950,405 + -2.1 950,405 + +3.2 950,405 + +3.9 950,405 + -0.1 950,405 + +1.3 950,405 + +0.9 950,406 - +1.9 950,406 - -2.2 950,406 - +0.4 950,406 - +1.3 950,406 - -0.8 950,406 - +0.6 950,420 + +0.3 950,420 + -0.8 950,421 - +0.3 950,421 - +0.5 950,421 - +0.9 950,576 + +0.1 950,576 + -0.5 950,577 - -0.2 950,662 + -0.7 950,663 - -1.1 950,663 - -0.8 950,691 + -1.5 950,691 + +0.4 950,692 - +1.0 950,692 - -0.7 950,713 + -0.5 950,714 - -1.7 950,864 + +1.0 950,864 + +0.5 950,864 + +0.8 950,864 + -1.4 950,864 + +0.4 950,864 + +1.9 950,864 + +2.1 950,864 + +0.3 950,865 - -0.6 950,865 - -0.3 950,865 - -2.0 950,865 - +0.1 950,865 - -0.4 950,865 - -0.3 950,867 + +0.5 950,868 - +0.4 950,868 - -0.7 950,868 - -2.0 950,868 - -0.7 950,868 - +0.9 950,868 - +0.2 951,047 + ABIE53_004748 0.21 +0.7 951,141 - ABIE53_004748 0.27 +1.4 951,168 + ABIE53_004748 0.29 -1.0 951,168 + ABIE53_004748 0.29 -1.0 951,168 + ABIE53_004748 0.29 +1.9 951,169 - ABIE53_004748 0.29 +0.1 951,197 + ABIE53_004748 0.30 +0.6 951,197 + ABIE53_004748 0.30 +3.2 951,197 + ABIE53_004748 0.30 +1.7 951,197 + ABIE53_004748 0.30 -0.3 951,197 + ABIE53_004748 0.30 +0.3 951,197 + ABIE53_004748 0.30 -1.0 951,197 + ABIE53_004748 0.30 +0.3 951,197 + ABIE53_004748 0.30 +0.0 951,197 + ABIE53_004748 0.30 -0.4 951,198 - ABIE53_004748 0.30 -0.1 951,198 - ABIE53_004748 0.30 +0.2 951,198 - ABIE53_004748 0.30 -0.4 951,198 - ABIE53_004748 0.30 +1.5 951,198 - ABIE53_004748 0.30 -1.3 951,198 - ABIE53_004748 0.30 -1.5 951,198 - ABIE53_004748 0.30 +1.4 951,198 - ABIE53_004748 0.30 -1.3 951,198 - ABIE53_004748 0.30 -0.5 951,198 - ABIE53_004748 0.30 -0.7 951,245 + ABIE53_004748 0.34 +0.4 951,245 + ABIE53_004748 0.34 +3.4 951,246 - ABIE53_004748 0.34 -2.2 951,246 - ABIE53_004748 0.34 +0.4 951,246 - ABIE53_004748 0.34 +0.5 951,321 - ABIE53_004748 0.38 -0.7 951,411 - ABIE53_004748 0.44 -1.6 951,411 - ABIE53_004748 0.44 -0.1 951,411 - ABIE53_004748 0.44 -0.1 951,475 - ABIE53_004748 0.48 -0.5 951,475 - ABIE53_004748 0.48 +1.1 951,548 + ABIE53_004748 0.53 -1.4 951,548 + ABIE53_004748 0.53 +0.2 951,548 + ABIE53_004748 0.53 -0.2 951,548 + ABIE53_004748 0.53 -2.6 951,549 - ABIE53_004748 0.53 -1.1 951,625 - ABIE53_004748 0.58 -0.3 951,630 + ABIE53_004748 0.58 -1.1 951,630 + ABIE53_004748 0.58 -1.0 951,631 - ABIE53_004748 0.58 +1.4 951,683 + ABIE53_004748 0.62 -0.7 951,683 + ABIE53_004748 0.62 +1.6 951,684 - ABIE53_004748 0.62 +0.9 951,730 + ABIE53_004748 0.65 -1.7 951,731 + ABIE53_004748 0.65 -3.0 951,731 + ABIE53_004748 0.65 +0.7 951,731 + ABIE53_004748 0.65 -2.5 951,731 + ABIE53_004748 0.65 +0.9 951,732 - ABIE53_004748 0.65 -1.5 951,732 - ABIE53_004748 0.65 -0.1 951,732 - ABIE53_004748 0.65 +0.3 951,732 - ABIE53_004748 0.65 -2.1 952,025 + ABIE53_004748 0.84 -1.8 952,025 + ABIE53_004748 0.84 -2.9 952,025 + ABIE53_004748 0.84 -1.2 952,025 + ABIE53_004748 0.84 -1.0 952,025 + ABIE53_004748 0.84 -1.3 952,025 + ABIE53_004748 0.84 -0.5 952,025 + ABIE53_004748 0.84 -3.2 952,025 + ABIE53_004748 0.84 -1.2 952,025 + ABIE53_004748 0.84 -3.6 952,025 + ABIE53_004748 0.84 -0.7 952,025 + ABIE53_004748 0.84 -0.5 952,026 - ABIE53_004748 0.84 -0.1 952,026 - ABIE53_004748 0.84 +0.0 952,026 - ABIE53_004748 0.84 +0.2 952,026 - ABIE53_004748 0.84 +0.6 952,026 - ABIE53_004748 0.84 -0.1 952,026 - ABIE53_004748 0.84 -0.7 952,026 - ABIE53_004748 0.84 -0.1 952,026 - ABIE53_004748 0.84 +0.9 952,026 - ABIE53_004748 0.84 -0.4 952,026 - ABIE53_004748 0.84 -1.1 952,026 - ABIE53_004748 0.84 -1.0 952,026 - ABIE53_004748 0.84 -0.1 952,026 - ABIE53_004748 0.84 +2.0 952,056 - ABIE53_004748 0.86 -0.4 952,056 - ABIE53_004748 0.86 -0.6 952,056 - ABIE53_004748 0.86 +0.3 952,056 - ABIE53_004748 0.86 +0.3 952,056 - ABIE53_004748 0.86 -0.5 952,079 + ABIE53_004748 0.87 -2.2 952,079 + ABIE53_004748 0.87 +0.6 952,079 + ABIE53_004748 0.87 -0.3 952,080 - ABIE53_004748 0.87 +0.3 952,080 - ABIE53_004748 0.87 +0.9 952,080 - ABIE53_004748 0.87 -0.7 952,095 + ABIE53_004748 0.88 +1.9 952,096 - ABIE53_004748 0.88 -0.7 952,209 - +0.1 952,269 + -1.6 952,270 - +0.1 952,308 + +0.8 952,308 + -1.0 952,309 - -0.9 952,313 + +1.2 952,313 + -1.0 952,314 - +0.5 952,329 + -2.4 952,329 + -1.9 952,329 + -0.8 952,329 + -1.3 952,329 + -1.0 952,329 + -4.8 952,329 + -0.2 952,329 + -2.0 952,330 - -1.9 952,330 - +1.0 952,330 - -0.7 952,330 - -0.9 952,330 - +0.0 952,330 - +1.3 952,330 - +0.1 952,330 - +0.8 952,330 - +2.3 952,331 + -1.9 952,331 + -0.6 952,331 + -1.2 952,332 - +0.1 952,364 + -1.6 952,365 - -0.7 952,399 + -1.4 952,399 + +0.0 952,399 + -0.7 952,399 + -0.5 952,400 - -0.2 952,454 + +1.0 952,454 + -0.0 952,454 + +0.8 952,454 + +1.3 952,454 + -2.1 952,455 - +0.3 952,455 - -1.7 952,455 - -0.5 952,455 - -1.2 952,455 - -0.3 952,499 + +0.3 952,499 + +0.3 952,499 + -0.9 952,499 + -0.2 952,499 + -2.4 952,499 + -0.8 952,499 + -0.2 952,499 + +0.3 952,499 + +0.4 952,499 + -0.3 952,499 + +0.3 952,499 + -0.2 952,500 - -1.2 952,500 - +0.3 952,500 - -0.7 952,500 - -0.9 952,500 - -0.5 952,500 - -0.5 952,500 - +1.1 952,500 - -0.4 952,500 - -0.6 952,500 - -1.0 952,500 - +0.3 952,500 - -0.2 952,670 + ABIE53_004749 0.24 -2.7 952,670 + ABIE53_004749 0.24 -2.0 952,670 + ABIE53_004749 0.24 -0.6 952,670 + ABIE53_004749 0.24 -2.7 952,671 - ABIE53_004749 0.24 -0.9 952,671 - ABIE53_004749 0.24 +1.8 952,940 + ABIE53_004749 0.48 +1.6 952,940 + ABIE53_004749 0.48 +0.8 952,985 + ABIE53_004749 0.52 +0.8 952,985 + ABIE53_004749 0.52 +1.6 952,986 - ABIE53_004749 0.52 +1.3 953,069 - ABIE53_004749 0.59 +0.8 953,084 + ABIE53_004749 0.61 +0.3 953,084 + ABIE53_004749 0.61 +0.1 953,084 + ABIE53_004749 0.61 -1.3 953,161 - ABIE53_004749 0.67 -1.0
Or see this region's nucleotide sequence