Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1446

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml
1,779,686	+				-1.5
1,779,708	+				+0.9
1,779,708	+				-1.9
1,779,923	+		BT1445	0.28	-1.8
1,779,941	-		BT1445	0.30	-0.2
1,779,956	+		BT1445	0.32	-2.3
1,780,024	-		BT1445	0.41	-0.4
1,780,032	+		BT1445	0.42	-0.5
1,780,033	-		BT1445	0.42	-2.6
1,780,033	-		BT1445	0.42	-1.5
1,780,092	+		BT1445	0.49	-1.9
1,780,093	-		BT1445	0.50	-2.0
1,780,187	-		BT1445	0.62	-1.9
1,780,234	-		BT1445	0.68	-1.6
1,780,234	-		BT1445	0.68	-2.4
1,780,235	+		BT1445	0.68	-2.7
1,780,447	+				-1.8
1,780,448	-				-2.9
1,780,448	-				-1.2
1,780,448	-				-2.5
1,780,460	-				-1.7
1,780,460	-				-3.4
1,780,467	-				-2.4
1,780,467	-				-2.1
1,780,485	-				-1.7
1,780,639	+		BT1446	0.24	-3.1
1,780,639	+		BT1446	0.24	-2.4
1,780,640	-		BT1446	0.24	-1.9
1,780,640	-		BT1446	0.24	-1.4
1,780,791	-		BT1446	0.47	-2.6
1,780,884	+		BT1446	0.62	-3.7
1,780,885	-		BT1446	0.62	-2.0
1,780,933	+		BT1446	0.69	-4.0
1,780,933	+		BT1446	0.69	-1.0
1,780,934	-		BT1446	0.69	-2.5
1,780,997	+		BT1446	0.79	-2.1
1,780,997	+		BT1446	0.79	-2.0
1,781,003	-		BT1446	0.80	-1.1
1,781,009	+		BT1446	0.81	-3.8
1,781,034	-		BT1446	0.85	-1.6
1,781,051	+		BT1446	0.87	+0.5
1,781,064	-		BT1446	0.89	-1.2
1,781,064	-		BT1446	0.89	-1.9
1,781,139	+				-0.3
1,781,139	+				-0.2
1,781,140	-				+0.6
1,781,141	+				+0.5
1,781,142	-				-2.4
1,781,156	-				+1.1
1,781,454	-		BT1447	0.13	-0.9
1,781,467	-		BT1447	0.13	+0.7
1,781,573	+		BT1447	0.18	+0.2
1,781,597	-		BT1447	0.19	+0.7
1,781,661	+		BT1447	0.21	-2.1
1,781,670	+		BT1447	0.22	+0.1
1,781,783	+		BT1447	0.27	-1.0
1,781,783	+		BT1447	0.27	+1.1
1,781,822	+		BT1447	0.28	+0.2
1,781,880	-		BT1447	0.31	+1.1
1,781,951	-		BT1447	0.34	-0.5
1,781,979	-		BT1447	0.35	+0.5
1,782,054	+		BT1447	0.38	+0.5
1,782,060	-		BT1447	0.38	+1.5
1,782,116	+		BT1447	0.41	-1.0
1,782,116	+		BT1447	0.41	-0.4
1,782,127	+		BT1447	0.41	-0.1