Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0747

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0746 and BT0747 are separated by 83 nucleotidesBT0747 and BT0748 are separated by 88 nucleotides BT0746: BT0746 - putative zinc protease (NCBI ptt file), at 924,065 to 925,348 BT0746 BT0747: BT0747 - putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file), at 925,432 to 926,601 BT0747 BT0748: BT0748 - ribose-phosphate pyrophosphokinase (NCBI ptt file), at 926,690 to 927,607 BT0748 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 924.463 kb on + strand, within BT0746at 924.508 kb on + strand, within BT0746at 924.645 kb on - strand, within BT0746at 924.847 kb on + strand, within BT0746at 924.847 kb on + strand, within BT0746at 924.886 kb on - strand, within BT0746at 924.937 kb on + strand, within BT0746at 924.961 kb on + strand, within BT0746at 925.136 kb on - strand, within BT0746at 925.296 kb on - strandat 926.080 kb on + strand, within BT0747at 926.214 kb on + strand, within BT0747at 926.219 kb on - strand, within BT0747at 926.376 kb on + strand, within BT0747at 926.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml
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924,463 + BT0746 0.31 +1.5
924,508 + BT0746 0.35 -0.3
924,645 - BT0746 0.45 +0.7
924,847 + BT0746 0.61 +1.9
924,847 + BT0746 0.61 -1.0
924,886 - BT0746 0.64 +1.5
924,937 + BT0746 0.68 -0.9
924,961 + BT0746 0.70 -0.7
925,136 - BT0746 0.83 +3.5
925,296 - +1.2
926,080 + BT0747 0.55 -1.5
926,214 + BT0747 0.67 -2.1
926,219 - BT0747 0.67 -0.5
926,376 + BT0747 0.81 -2.0
926,700 + -0.8

Or see this region's nucleotide sequence