Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0745

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0743 and BT0744 overlap by 131 nucleotidesBT0744 and BT0745 overlap by 4 nucleotidesBT0745 and BT0746 are separated by 3 nucleotides BT0743: BT0743 - penicillin-binding protein 1A (PBP-1a) (NCBI ptt file), at 920,582 to 922,921 BT0743 BT0744: BT0744 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file), at 922,791 to 923,312 BT0744 BT0745: BT0745 - 3-deoxy-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 923,309 to 924,061 BT0745 BT0746: BT0746 - putative zinc protease (NCBI ptt file), at 924,065 to 925,348 BT0746 Position (kb) 923 924 925Strain fitness (log2 ratio) -1 0 1 2at 924.078 kb on + strandat 924.090 kb on + strandat 924.200 kb on - strand, within BT0746at 924.320 kb on + strand, within BT0746at 924.367 kb on + strand, within BT0746at 924.463 kb on + strand, within BT0746at 924.508 kb on + strand, within BT0746at 924.645 kb on - strand, within BT0746at 924.847 kb on + strand, within BT0746at 924.847 kb on + strand, within BT0746at 924.886 kb on - strand, within BT0746at 924.937 kb on + strand, within BT0746at 924.961 kb on + strand, within BT0746

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml
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924,078 + -0.7
924,090 + +2.2
924,200 - BT0746 0.11 -1.1
924,320 + BT0746 0.20 +0.0
924,367 + BT0746 0.24 -0.7
924,463 + BT0746 0.31 +1.5
924,508 + BT0746 0.35 -0.3
924,645 - BT0746 0.45 +0.7
924,847 + BT0746 0.61 +1.9
924,847 + BT0746 0.61 -1.0
924,886 - BT0746 0.64 +1.5
924,937 + BT0746 0.68 -0.9
924,961 + BT0746 0.70 -0.7

Or see this region's nucleotide sequence