Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0598 and BT0599 are separated by 34 nucleotides BT0599 and BT0600 are separated by 4 nucleotides
BT0598: BT0598 - putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file), at 737,168 to 739,093
BT0598
BT0599: BT0599 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 739,128 to 740,444
BT0599
BT0600: BT0600 - nucleotide sugar epimerase (NCBI ptt file), at 740,449 to 741,513
BT0600
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 738.276 kb on - strand, within BT0598 at 738.289 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.867 kb on - strand, within BT0598 at 739.042 kb on - strand at 739.096 kb on - strand at 739.119 kb on - strand at 739.432 kb on + strand, within BT0599 at 739.432 kb on + strand, within BT0599 at 739.433 kb on - strand, within BT0599 at 739.483 kb on + strand, within BT0599 at 739.533 kb on + strand, within BT0599 at 739.611 kb on - strand, within BT0599 at 739.775 kb on + strand, within BT0599 at 739.829 kb on + strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 740.072 kb on + strand, within BT0599 at 740.108 kb on + strand, within BT0599 at 740.122 kb on - strand, within BT0599 at 740.418 kb on - strand at 740.458 kb on + strand at 740.594 kb on - strand, within BT0600 at 740.594 kb on - strand, within BT0600 at 740.753 kb on + strand, within BT0600 at 740.785 kb on - strand, within BT0600 at 740.820 kb on - strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.871 kb on + strand, within BT0600 at 740.902 kb on + strand, within BT0600 at 740.953 kb on - strand, within BT0600 at 740.970 kb on - strand, within BT0600 at 741.119 kb on - strand, within BT0600 at 741.145 kb on + strand, within BT0600 at 741.168 kb on + strand, within BT0600 at 741.242 kb on + strand, within BT0600 at 741.245 kb on - strand, within BT0600 at 741.246 kb on + strand, within BT0600 at 741.247 kb on - strand, within BT0600
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml remove 738,276 - BT0598 0.58 -0.2 738,289 - BT0598 0.58 +0.1 738,311 - BT0598 0.59 -1.8 738,311 - BT0598 0.59 -0.7 738,496 - BT0598 0.69 -0.1 738,496 - BT0598 0.69 -0.0 738,824 - BT0598 0.86 -0.4 738,824 - BT0598 0.86 -1.7 738,867 - BT0598 0.88 -0.5 739,042 - -0.8 739,096 - -2.5 739,119 - +0.0 739,432 + BT0599 0.23 -1.9 739,432 + BT0599 0.23 -1.5 739,433 - BT0599 0.23 -2.0 739,483 + BT0599 0.27 -2.4 739,533 + BT0599 0.31 -0.3 739,611 - BT0599 0.37 -0.5 739,775 + BT0599 0.49 +0.3 739,829 + BT0599 0.53 -1.4 739,833 - BT0599 0.54 -0.5 739,833 - BT0599 0.54 +0.1 739,878 + BT0599 0.57 -0.1 739,878 + BT0599 0.57 -2.4 740,072 + BT0599 0.72 -2.0 740,108 + BT0599 0.74 -1.1 740,122 - BT0599 0.75 -0.7 740,418 - -1.3 740,458 + -1.7 740,594 - BT0600 0.14 -3.5 740,594 - BT0600 0.14 -0.7 740,753 + BT0600 0.29 -3.7 740,785 - BT0600 0.32 -0.6 740,820 - BT0600 0.35 +0.1 740,857 + BT0600 0.38 -1.1 740,857 + BT0600 0.38 -0.6 740,871 + BT0600 0.40 -1.5 740,902 + BT0600 0.43 -0.3 740,953 - BT0600 0.47 -2.3 740,970 - BT0600 0.49 -0.5 741,119 - BT0600 0.63 +0.3 741,145 + BT0600 0.65 +0.2 741,168 + BT0600 0.68 -0.3 741,242 + BT0600 0.74 -0.8 741,245 - BT0600 0.75 -0.9 741,246 + BT0600 0.75 -1.1 741,247 - BT0600 0.75 -0.9
Or see this region's nucleotide sequence