Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4946 and Psyr_4947 are separated by 209 nucleotides Psyr_4947 and Psyr_4948 are separated by 133 nucleotides Psyr_4948 and Psyr_4949 are separated by 131 nucleotides
Psyr_4946: Psyr_4946 - Oxidoreductase alpha (molybdopterin) subunit, at 5,860,973 to 5,863,309
_4946
Psyr_4947: Psyr_4947 - conserved hypothetical protein, at 5,863,519 to 5,863,959
_4947
Psyr_4948: Psyr_4948 - ATP-dependent DNA helicase, RecQ-like protein, at 5,864,093 to 5,866,042
_4948
Psyr_4949: Psyr_4949 - conserved hypothetical protein, at 5,866,174 to 5,866,995
_4949
Position (kb) 5864
5865
5866
5867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5863.188 kb on - strand at 5863.370 kb on - strand at 5863.395 kb on - strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.465 kb on + strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.466 kb on - strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.516 kb on + strand at 5863.517 kb on - strand at 5863.517 kb on - strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.525 kb on + strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.526 kb on - strand at 5863.535 kb on + strand at 5863.536 kb on - strand at 5863.598 kb on + strand, within Psyr_4947 at 5863.729 kb on - strand, within Psyr_4947 at 5863.827 kb on - strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.858 kb on + strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.859 kb on - strand, within Psyr_4947 at 5863.960 kb on + strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5863.984 kb on - strand at 5864.084 kb on + strand at 5864.085 kb on - strand at 5864.085 kb on - strand at 5864.091 kb on - strand at 5864.217 kb on - strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.259 kb on + strand at 5864.260 kb on - strand at 5864.260 kb on - strand at 5864.260 kb on - strand at 5864.412 kb on + strand, within Psyr_4948 at 5864.413 kb on - strand, within Psyr_4948 at 5864.413 kb on - strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.508 kb on + strand, within Psyr_4948 at 5864.565 kb on + strand, within Psyr_4948 at 5864.565 kb on + strand, within Psyr_4948 at 5864.619 kb on + strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.620 kb on - strand, within Psyr_4948 at 5864.658 kb on + strand, within Psyr_4948 at 5864.659 kb on - strand, within Psyr_4948 at 5864.659 kb on - strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.667 kb on + strand, within Psyr_4948 at 5864.668 kb on - strand, within Psyr_4948 at 5864.668 kb on - strand, within Psyr_4948 at 5864.802 kb on + strand, within Psyr_4948 at 5864.802 kb on + strand, within Psyr_4948 at 5864.815 kb on - strand, within Psyr_4948 at 5865.000 kb on + strand, within Psyr_4948 at 5865.001 kb on - strand, within Psyr_4948 at 5865.001 kb on - strand, within Psyr_4948 at 5865.099 kb on + strand, within Psyr_4948 at 5865.099 kb on + strand, within Psyr_4948 at 5865.099 kb on + strand, within Psyr_4948 at 5865.099 kb on + strand, within Psyr_4948 at 5865.099 kb on + strand, within Psyr_4948 at 5865.100 kb on - strand, within Psyr_4948 at 5865.100 kb on - strand, within Psyr_4948 at 5865.100 kb on - strand, within Psyr_4948 at 5865.100 kb on - strand, within Psyr_4948 at 5865.261 kb on + strand, within Psyr_4948 at 5865.304 kb on + strand, within Psyr_4948 at 5865.304 kb on + strand, within Psyr_4948 at 5865.305 kb on - strand, within Psyr_4948 at 5865.333 kb on + strand, within Psyr_4948 at 5865.334 kb on - strand, within Psyr_4948 at 5865.596 kb on - strand, within Psyr_4948 at 5865.894 kb on + strand at 5865.899 kb on + strand at 5865.899 kb on + strand at 5865.899 kb on + strand at 5865.899 kb on + strand at 5865.900 kb on - strand at 5865.900 kb on - strand at 5865.900 kb on - strand at 5865.900 kb on - strand at 5866.004 kb on + strand at 5866.005 kb on - strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.089 kb on + strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.090 kb on - strand at 5866.115 kb on - strand at 5866.184 kb on + strand at 5866.330 kb on - strand, within Psyr_4949 at 5866.666 kb on + strand, within Psyr_4949 at 5866.666 kb on + strand, within Psyr_4949 at 5866.666 kb on + strand, within Psyr_4949 at 5866.667 kb on - strand, within Psyr_4949 at 5866.667 kb on - strand, within Psyr_4949 at 5866.667 kb on - strand, within Psyr_4949 at 5866.667 kb on - strand, within Psyr_4949 at 5866.723 kb on + strand, within Psyr_4949 at 5866.723 kb on + strand, within Psyr_4949 at 5866.724 kb on - strand, within Psyr_4949 at 5866.724 kb on - strand, within Psyr_4949 at 5866.724 kb on - strand, within Psyr_4949 at 5866.793 kb on - strand, within Psyr_4949
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 5,863,188 - -1.5 5,863,370 - +0.7 5,863,395 - +0.1 5,863,465 + -0.1 5,863,465 + +0.7 5,863,465 + -0.7 5,863,465 + +1.3 5,863,465 + +1.1 5,863,466 - -0.3 5,863,466 - -1.1 5,863,466 - +0.1 5,863,516 + -0.4 5,863,516 + -1.3 5,863,516 + -0.3 5,863,516 + -0.3 5,863,516 + +0.7 5,863,516 + +1.4 5,863,516 + -0.5 5,863,517 - -1.1 5,863,517 - -0.8 5,863,525 + +0.4 5,863,525 + +0.6 5,863,525 + +1.2 5,863,526 - -2.7 5,863,526 - -0.1 5,863,526 - -1.1 5,863,526 - -2.2 5,863,535 + -1.1 5,863,536 - +0.6 5,863,598 + Psyr_4947 0.18 +0.5 5,863,729 - Psyr_4947 0.48 +1.5 5,863,827 - Psyr_4947 0.70 -3.3 5,863,858 + Psyr_4947 0.77 +1.2 5,863,858 + Psyr_4947 0.77 +1.1 5,863,858 + Psyr_4947 0.77 -0.6 5,863,858 + Psyr_4947 0.77 -0.2 5,863,858 + Psyr_4947 0.77 -0.4 5,863,858 + Psyr_4947 0.77 +0.1 5,863,858 + Psyr_4947 0.77 +0.7 5,863,858 + Psyr_4947 0.77 +0.2 5,863,858 + Psyr_4947 0.77 -0.5 5,863,858 + Psyr_4947 0.77 -0.5 5,863,858 + Psyr_4947 0.77 -0.5 5,863,859 - Psyr_4947 0.77 -1.7 5,863,859 - Psyr_4947 0.77 +0.5 5,863,859 - Psyr_4947 0.77 +0.5 5,863,859 - Psyr_4947 0.77 -0.5 5,863,859 - Psyr_4947 0.77 +1.9 5,863,859 - Psyr_4947 0.77 -0.8 5,863,859 - Psyr_4947 0.77 +1.5 5,863,859 - Psyr_4947 0.77 +0.8 5,863,859 - Psyr_4947 0.77 -2.1 5,863,859 - Psyr_4947 0.77 +0.8 5,863,859 - Psyr_4947 0.77 +0.9 5,863,960 + +0.1 5,863,984 - +0.3 5,863,984 - -1.4 5,863,984 - +0.4 5,864,084 + +0.6 5,864,085 - -0.2 5,864,085 - +0.7 5,864,091 - -0.6 5,864,217 - -0.4 5,864,259 + -0.5 5,864,259 + -0.8 5,864,259 + -0.2 5,864,259 + +1.7 5,864,259 + +0.1 5,864,260 - -0.5 5,864,260 - -1.3 5,864,260 - +0.1 5,864,412 + Psyr_4948 0.16 +0.7 5,864,413 - Psyr_4948 0.16 +0.1 5,864,413 - Psyr_4948 0.16 -1.1 5,864,508 + Psyr_4948 0.21 -0.6 5,864,508 + Psyr_4948 0.21 -1.4 5,864,508 + Psyr_4948 0.21 -1.1 5,864,565 + Psyr_4948 0.24 +1.0 5,864,565 + Psyr_4948 0.24 -0.7 5,864,619 + Psyr_4948 0.27 +0.3 5,864,620 - Psyr_4948 0.27 +0.6 5,864,620 - Psyr_4948 0.27 -2.5 5,864,620 - Psyr_4948 0.27 +0.8 5,864,658 + Psyr_4948 0.29 +0.7 5,864,659 - Psyr_4948 0.29 +1.2 5,864,659 - Psyr_4948 0.29 +0.6 5,864,667 + Psyr_4948 0.29 +0.4 5,864,667 + Psyr_4948 0.29 +1.0 5,864,667 + Psyr_4948 0.29 -0.2 5,864,667 + Psyr_4948 0.29 +0.5 5,864,667 + Psyr_4948 0.29 +0.5 5,864,668 - Psyr_4948 0.29 +0.7 5,864,668 - Psyr_4948 0.29 +0.8 5,864,802 + Psyr_4948 0.36 +0.6 5,864,802 + Psyr_4948 0.36 +1.5 5,864,815 - Psyr_4948 0.37 -0.9 5,865,000 + Psyr_4948 0.47 +0.5 5,865,001 - Psyr_4948 0.47 +0.2 5,865,001 - Psyr_4948 0.47 +1.5 5,865,099 + Psyr_4948 0.52 +0.6 5,865,099 + Psyr_4948 0.52 -0.5 5,865,099 + Psyr_4948 0.52 +1.1 5,865,099 + Psyr_4948 0.52 -0.2 5,865,099 + Psyr_4948 0.52 +0.1 5,865,100 - Psyr_4948 0.52 -0.4 5,865,100 - Psyr_4948 0.52 -0.0 5,865,100 - Psyr_4948 0.52 +0.2 5,865,100 - Psyr_4948 0.52 -0.3 5,865,261 + Psyr_4948 0.60 +0.3 5,865,304 + Psyr_4948 0.62 +0.2 5,865,304 + Psyr_4948 0.62 -3.7 5,865,305 - Psyr_4948 0.62 +1.0 5,865,333 + Psyr_4948 0.64 +1.6 5,865,334 - Psyr_4948 0.64 -0.8 5,865,596 - Psyr_4948 0.77 +0.3 5,865,894 + -0.2 5,865,899 + -0.3 5,865,899 + +0.7 5,865,899 + -0.3 5,865,899 + -0.1 5,865,900 - -1.4 5,865,900 - -0.8 5,865,900 - -0.8 5,865,900 - -1.8 5,866,004 + +0.3 5,866,005 - -0.2 5,866,089 + -0.5 5,866,089 + -1.4 5,866,089 + +0.5 5,866,089 + +0.5 5,866,089 + -0.0 5,866,089 + -0.7 5,866,089 + -0.0 5,866,089 + +0.3 5,866,089 + -1.4 5,866,089 + +1.9 5,866,089 + -0.3 5,866,090 - -1.1 5,866,090 - +0.3 5,866,090 - +0.7 5,866,090 - +1.0 5,866,090 - +0.6 5,866,090 - +0.3 5,866,090 - +0.3 5,866,115 - +0.4 5,866,184 + +0.2 5,866,330 - Psyr_4949 0.19 +0.4 5,866,666 + Psyr_4949 0.60 -2.5 5,866,666 + Psyr_4949 0.60 -0.1 5,866,666 + Psyr_4949 0.60 +1.1 5,866,667 - Psyr_4949 0.60 -1.6 5,866,667 - Psyr_4949 0.60 +1.0 5,866,667 - Psyr_4949 0.60 -1.1 5,866,667 - Psyr_4949 0.60 +0.4 5,866,723 + Psyr_4949 0.67 +0.6 5,866,723 + Psyr_4949 0.67 +1.3 5,866,724 - Psyr_4949 0.67 -1.0 5,866,724 - Psyr_4949 0.67 +0.7 5,866,724 - Psyr_4949 0.67 +1.7 5,866,793 - Psyr_4949 0.75 +0.1
Or see this region's nucleotide sequence