Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4858

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4857 and Psyr_4858 are separated by 270 nucleotidesPsyr_4858 and Psyr_4859 are separated by 742 nucleotides Psyr_4857: Psyr_4857 - conserved hypothetical protein, at 5,763,056 to 5,763,997 _4857 Psyr_4858: Psyr_4858 - Penicillin amidase, at 5,764,268 to 5,766,655 _4858 Psyr_4859: Psyr_4859 - ISPsy8, transposase OrfA, at 5,767,398 to 5,767,913 _4859 Position (kb) 5764 5765 5766 5767Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5763.423 kb on + strand, within Psyr_4857at 5763.423 kb on + strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.741 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.760 kb on - strand, within Psyr_4857at 5763.760 kb on - strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.864 kb on - strand, within Psyr_4857at 5763.897 kb on + strand, within Psyr_4857at 5763.909 kb on + strandat 5763.910 kb on - strandat 5764.037 kb on + strandat 5764.043 kb on + strandat 5764.073 kb on + strandat 5764.073 kb on + strandat 5764.074 kb on - strandat 5764.083 kb on + strandat 5764.093 kb on + strandat 5764.094 kb on - strandat 5764.094 kb on - strandat 5764.094 kb on - strandat 5764.094 kb on - strandat 5764.094 kb on - strandat 5764.229 kb on - strandat 5764.245 kb on + strandat 5764.254 kb on + strandat 5764.254 kb on + strandat 5764.255 kb on - strandat 5764.255 kb on - strandat 5764.255 kb on - strandat 5764.290 kb on + strandat 5764.290 kb on + strandat 5764.290 kb on + strandat 5764.291 kb on - strandat 5764.291 kb on - strandat 5764.291 kb on - strandat 5764.331 kb on + strandat 5764.331 kb on + strandat 5764.332 kb on - strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.335 kb on + strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.336 kb on - strandat 5764.339 kb on + strandat 5764.340 kb on - strandat 5764.340 kb on - strandat 5764.340 kb on - strandat 5764.472 kb on + strandat 5764.545 kb on + strand, within Psyr_4858at 5764.545 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.616 kb on + strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.617 kb on - strand, within Psyr_4858at 5764.667 kb on + strand, within Psyr_4858at 5764.667 kb on + strand, within Psyr_4858at 5764.667 kb on + strand, within Psyr_4858at 5764.667 kb on + strand, within Psyr_4858at 5764.668 kb on - strand, within Psyr_4858at 5764.688 kb on + strand, within Psyr_4858at 5764.781 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.832 kb on + strand, within Psyr_4858at 5764.833 kb on - strand, within Psyr_4858at 5764.833 kb on - strand, within Psyr_4858at 5764.833 kb on - strand, within Psyr_4858at 5764.833 kb on - strand, within Psyr_4858at 5764.833 kb on - strand, within Psyr_4858at 5764.859 kb on + strand, within Psyr_4858at 5764.859 kb on + strand, within Psyr_4858at 5764.859 kb on + strand, within Psyr_4858at 5764.859 kb on + strand, within Psyr_4858at 5764.860 kb on - strand, within Psyr_4858at 5764.860 kb on - strand, within Psyr_4858at 5765.142 kb on - strand, within Psyr_4858at 5765.282 kb on + strand, within Psyr_4858at 5765.383 kb on + strand, within Psyr_4858at 5765.384 kb on - strand, within Psyr_4858at 5765.384 kb on - strand, within Psyr_4858at 5765.480 kb on + strand, within Psyr_4858at 5765.481 kb on - strand, within Psyr_4858at 5765.500 kb on + strand, within Psyr_4858at 5765.518 kb on + strand, within Psyr_4858at 5765.729 kb on + strand, within Psyr_4858at 5765.729 kb on + strand, within Psyr_4858at 5765.730 kb on - strand, within Psyr_4858at 5765.730 kb on - strand, within Psyr_4858at 5765.730 kb on - strand, within Psyr_4858at 5765.786 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.789 kb on + strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.790 kb on - strand, within Psyr_4858at 5765.897 kb on + strand, within Psyr_4858at 5765.898 kb on - strand, within Psyr_4858at 5765.898 kb on - strand, within Psyr_4858at 5766.261 kb on - strand, within Psyr_4858at 5766.490 kb on + strandat 5766.491 kb on - strandat 5766.491 kb on - strandat 5766.491 kb on - strandat 5766.491 kb on - strandat 5766.543 kb on - strandat 5766.578 kb on + strandat 5766.578 kb on + strandat 5766.619 kb on + strandat 5767.339 kb on + strandat 5767.339 kb on + strandat 5767.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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5,763,423 + Psyr_4857 0.39 -0.5
5,763,423 + Psyr_4857 0.39 -0.6
5,763,424 - Psyr_4857 0.39 +0.3
5,763,424 - Psyr_4857 0.39 +0.8
5,763,424 - Psyr_4857 0.39 +0.7
5,763,741 + Psyr_4857 0.73 +1.8
5,763,759 + Psyr_4857 0.75 +0.4
5,763,759 + Psyr_4857 0.75 -0.5
5,763,759 + Psyr_4857 0.75 -1.4
5,763,759 + Psyr_4857 0.75 +2.7
5,763,759 + Psyr_4857 0.75 -0.3
5,763,759 + Psyr_4857 0.75 +1.5
5,763,760 - Psyr_4857 0.75 +0.7
5,763,760 - Psyr_4857 0.75 -1.2
5,763,809 + Psyr_4857 0.80 -1.0
5,763,809 + Psyr_4857 0.80 +0.9
5,763,809 + Psyr_4857 0.80 -0.3
5,763,809 + Psyr_4857 0.80 -1.3
5,763,809 + Psyr_4857 0.80 -1.6
5,763,810 - Psyr_4857 0.80 +0.8
5,763,810 - Psyr_4857 0.80 +0.9
5,763,810 - Psyr_4857 0.80 -0.1
5,763,810 - Psyr_4857 0.80 +0.2
5,763,864 - Psyr_4857 0.86 +1.7
5,763,897 + Psyr_4857 0.89 -0.3
5,763,909 + -0.5
5,763,910 - -0.5
5,764,037 + -0.7
5,764,043 + +0.6
5,764,073 + +0.1
5,764,073 + +1.2
5,764,074 - -3.2
5,764,083 + -1.4
5,764,093 + +1.1
5,764,094 - +1.1
5,764,094 - +0.2
5,764,094 - +0.7
5,764,094 - +1.3
5,764,094 - -2.6
5,764,229 - +1.1
5,764,245 + -1.3
5,764,254 + +0.1
5,764,254 + -0.3
5,764,255 - -0.1
5,764,255 - +1.2
5,764,255 - +0.5
5,764,290 + -1.6
5,764,290 + -1.1
5,764,290 + +0.1
5,764,291 - -0.2
5,764,291 - +0.7
5,764,291 - +0.4
5,764,331 + +0.2
5,764,331 + +0.1
5,764,332 - -0.9
5,764,335 + -2.2
5,764,335 + +0.1
5,764,335 + -0.6
5,764,335 + -0.6
5,764,335 + -1.8
5,764,335 + +0.5
5,764,335 + -0.6
5,764,336 - +3.6
5,764,336 - +0.4
5,764,336 - +1.5
5,764,336 - -0.2
5,764,336 - +0.1
5,764,336 - +1.4
5,764,336 - -2.2
5,764,336 - +0.4
5,764,339 + -0.8
5,764,340 - +1.8
5,764,340 - -0.5
5,764,340 - +0.5
5,764,472 + +0.1
5,764,545 + Psyr_4858 0.12 -0.3
5,764,545 + Psyr_4858 0.12 -1.1
5,764,616 + Psyr_4858 0.15 -0.8
5,764,616 + Psyr_4858 0.15 -0.3
5,764,616 + Psyr_4858 0.15 +1.5
5,764,616 + Psyr_4858 0.15 +0.5
5,764,616 + Psyr_4858 0.15 +1.7
5,764,616 + Psyr_4858 0.15 -1.0
5,764,616 + Psyr_4858 0.15 -0.3
5,764,616 + Psyr_4858 0.15 +1.9
5,764,616 + Psyr_4858 0.15 +0.2
5,764,616 + Psyr_4858 0.15 +0.5
5,764,616 + Psyr_4858 0.15 -0.3
5,764,617 - Psyr_4858 0.15 +1.5
5,764,617 - Psyr_4858 0.15 +0.7
5,764,617 - Psyr_4858 0.15 -0.5
5,764,617 - Psyr_4858 0.15 +1.3
5,764,617 - Psyr_4858 0.15 -0.2
5,764,617 - Psyr_4858 0.15 +1.2
5,764,617 - Psyr_4858 0.15 +0.4
5,764,617 - Psyr_4858 0.15 -0.1
5,764,617 - Psyr_4858 0.15 +0.2
5,764,617 - Psyr_4858 0.15 +1.9
5,764,617 - Psyr_4858 0.15 +2.4
5,764,617 - Psyr_4858 0.15 +0.3
5,764,617 - Psyr_4858 0.15 +0.4
5,764,617 - Psyr_4858 0.15 +0.8
5,764,617 - Psyr_4858 0.15 +0.2
5,764,667 + Psyr_4858 0.17 +0.9
5,764,667 + Psyr_4858 0.17 -0.3
5,764,667 + Psyr_4858 0.17 +3.4
5,764,667 + Psyr_4858 0.17 +0.6
5,764,668 - Psyr_4858 0.17 -0.6
5,764,688 + Psyr_4858 0.18 -0.1
5,764,781 + Psyr_4858 0.21 +1.1
5,764,832 + Psyr_4858 0.24 -0.9
5,764,832 + Psyr_4858 0.24 +0.5
5,764,832 + Psyr_4858 0.24 -0.5
5,764,832 + Psyr_4858 0.24 +0.7
5,764,832 + Psyr_4858 0.24 +1.1
5,764,832 + Psyr_4858 0.24 -0.4
5,764,832 + Psyr_4858 0.24 +0.6
5,764,833 - Psyr_4858 0.24 -1.5
5,764,833 - Psyr_4858 0.24 -1.2
5,764,833 - Psyr_4858 0.24 +0.6
5,764,833 - Psyr_4858 0.24 -0.0
5,764,833 - Psyr_4858 0.24 +0.3
5,764,859 + Psyr_4858 0.25 -1.1
5,764,859 + Psyr_4858 0.25 -2.6
5,764,859 + Psyr_4858 0.25 -0.4
5,764,859 + Psyr_4858 0.25 -0.3
5,764,860 - Psyr_4858 0.25 +1.1
5,764,860 - Psyr_4858 0.25 -3.0
5,765,142 - Psyr_4858 0.37 -0.2
5,765,282 + Psyr_4858 0.42 +0.1
5,765,383 + Psyr_4858 0.47 +0.2
5,765,384 - Psyr_4858 0.47 +1.1
5,765,384 - Psyr_4858 0.47 +0.1
5,765,480 + Psyr_4858 0.51 -1.6
5,765,481 - Psyr_4858 0.51 +0.1
5,765,500 + Psyr_4858 0.52 -0.5
5,765,518 + Psyr_4858 0.52 -0.4
5,765,729 + Psyr_4858 0.61 -0.6
5,765,729 + Psyr_4858 0.61 -1.2
5,765,730 - Psyr_4858 0.61 +0.2
5,765,730 - Psyr_4858 0.61 -1.5
5,765,730 - Psyr_4858 0.61 -2.4
5,765,786 + Psyr_4858 0.64 -0.3
5,765,789 + Psyr_4858 0.64 +0.1
5,765,789 + Psyr_4858 0.64 +1.2
5,765,789 + Psyr_4858 0.64 -0.1
5,765,789 + Psyr_4858 0.64 +0.2
5,765,789 + Psyr_4858 0.64 -0.4
5,765,789 + Psyr_4858 0.64 +0.6
5,765,790 - Psyr_4858 0.64 +0.3
5,765,790 - Psyr_4858 0.64 +0.2
5,765,790 - Psyr_4858 0.64 +0.4
5,765,790 - Psyr_4858 0.64 -0.2
5,765,790 - Psyr_4858 0.64 +0.5
5,765,790 - Psyr_4858 0.64 -1.1
5,765,790 - Psyr_4858 0.64 +3.3
5,765,897 + Psyr_4858 0.68 +0.2
5,765,898 - Psyr_4858 0.68 +0.1
5,765,898 - Psyr_4858 0.68 -0.0
5,766,261 - Psyr_4858 0.83 +0.2
5,766,490 + -0.4
5,766,491 - +1.3
5,766,491 - -0.9
5,766,491 - -0.3
5,766,491 - +1.1
5,766,543 - +0.5
5,766,578 + -0.4
5,766,578 + -0.8
5,766,619 + -0.7
5,767,339 + -0.1
5,767,339 + -2.1
5,767,383 - +0.8

Or see this region's nucleotide sequence