Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4569 and Psyr_4570 are separated by 133 nucleotides Psyr_4570 and Psyr_4571 are separated by 85 nucleotides
Psyr_4569: Psyr_4569 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,433,388 to 5,434,422
_4569
Psyr_4570: Psyr_4570 - Conserved hypothetical protein 701, at 5,434,556 to 5,434,984
_4570
Psyr_4571: Psyr_4571 - Protein of unknown function DUF805, at 5,435,070 to 5,435,984
_4571
Position (kb) 5434
5435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5434.463 kb on - strand at 5434.501 kb on + strand at 5434.501 kb on + strand at 5434.501 kb on + strand at 5434.501 kb on + strand at 5434.502 kb on - strand at 5434.502 kb on - strand at 5434.502 kb on - strand at 5434.502 kb on - strand at 5434.519 kb on + strand at 5434.519 kb on + strand at 5434.519 kb on + strand at 5434.520 kb on - strand at 5434.520 kb on - strand at 5434.520 kb on - strand at 5434.522 kb on + strand at 5434.522 kb on + strand at 5435.050 kb on + strand at 5435.051 kb on - strand at 5435.051 kb on - strand at 5435.051 kb on - strand at 5435.095 kb on + strand at 5435.095 kb on + strand at 5435.095 kb on + strand at 5435.095 kb on + strand at 5435.095 kb on + strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.096 kb on - strand at 5435.232 kb on + strand, within Psyr_4571 at 5435.232 kb on + strand, within Psyr_4571 at 5435.232 kb on + strand, within Psyr_4571 at 5435.233 kb on - strand, within Psyr_4571 at 5435.289 kb on - strand, within Psyr_4571 at 5435.289 kb on - strand, within Psyr_4571 at 5435.376 kb on + strand, within Psyr_4571 at 5435.515 kb on + strand, within Psyr_4571 at 5435.515 kb on + strand, within Psyr_4571 at 5435.515 kb on + strand, within Psyr_4571 at 5435.516 kb on - strand, within Psyr_4571 at 5435.516 kb on - strand, within Psyr_4571 at 5435.516 kb on - strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.599 kb on + strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.600 kb on - strand, within Psyr_4571 at 5435.883 kb on + strand, within Psyr_4571 at 5435.884 kb on - strand, within Psyr_4571 at 5435.884 kb on - strand, within Psyr_4571 at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 5,434,463 - -0.3 5,434,501 + +1.8 5,434,501 + -0.6 5,434,501 + -0.9 5,434,501 + -0.1 5,434,502 - +0.1 5,434,502 - -1.5 5,434,502 - -0.3 5,434,502 - +1.1 5,434,519 + -2.0 5,434,519 + +0.0 5,434,519 + -0.0 5,434,520 - +1.1 5,434,520 - -0.3 5,434,520 - -2.1 5,434,522 + +1.4 5,434,522 + +0.0 5,435,050 + +0.9 5,435,051 - -0.7 5,435,051 - -1.8 5,435,051 - +1.8 5,435,095 + -0.6 5,435,095 + -0.2 5,435,095 + +1.3 5,435,095 + +0.2 5,435,095 + +1.1 5,435,096 - -0.2 5,435,096 - -0.6 5,435,096 - -1.1 5,435,096 - +1.9 5,435,096 - +0.7 5,435,096 - +0.3 5,435,096 - -2.2 5,435,232 + Psyr_4571 0.18 +2.7 5,435,232 + Psyr_4571 0.18 -0.7 5,435,232 + Psyr_4571 0.18 -0.1 5,435,233 - Psyr_4571 0.18 +0.7 5,435,289 - Psyr_4571 0.24 -1.7 5,435,289 - Psyr_4571 0.24 -0.7 5,435,376 + Psyr_4571 0.33 +0.5 5,435,515 + Psyr_4571 0.49 -0.5 5,435,515 + Psyr_4571 0.49 +0.6 5,435,515 + Psyr_4571 0.49 -0.2 5,435,516 - Psyr_4571 0.49 -0.2 5,435,516 - Psyr_4571 0.49 -0.1 5,435,516 - Psyr_4571 0.49 -0.4 5,435,599 + Psyr_4571 0.58 +0.0 5,435,599 + Psyr_4571 0.58 +0.0 5,435,599 + Psyr_4571 0.58 -1.7 5,435,599 + Psyr_4571 0.58 -1.7 5,435,600 - Psyr_4571 0.58 +0.9 5,435,600 - Psyr_4571 0.58 +0.8 5,435,600 - Psyr_4571 0.58 -0.6 5,435,600 - Psyr_4571 0.58 +1.5 5,435,600 - Psyr_4571 0.58 +0.7 5,435,883 + Psyr_4571 0.89 +0.5 5,435,884 - Psyr_4571 0.89 -0.2 5,435,884 - Psyr_4571 0.89 +1.0 5,435,956 + -0.5 5,435,956 + +1.2 5,435,956 + +1.5 5,435,956 + +0.4 5,435,957 - -1.1 5,435,957 - +1.9 5,435,957 - +1.0 5,435,957 - +0.0 5,435,957 - -0.3 5,435,957 - +0.1 5,435,982 + +1.5 5,435,982 + +0.1 5,435,982 + +1.8 5,435,982 + -0.4 5,435,982 + +1.8 5,435,983 - -2.0 5,435,983 - -0.5 5,435,983 - +0.1 5,435,983 - -1.4 5,435,983 - +1.1 5,435,983 - -1.9 5,435,983 - +0.4 5,435,983 - +1.1 5,435,983 - -0.1 5,435,983 - +0.0 5,435,983 - +0.5 5,435,983 - -0.5 5,435,983 - +0.6 5,435,983 - -0.4
Or see this region's nucleotide sequence