Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4568

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4567 and Psyr_4568 are separated by 62 nucleotidesPsyr_4568 and Psyr_4569 are separated by 264 nucleotides Psyr_4567: Psyr_4567 - Protein of unknown function UPF0075, at 5,431,616 to 5,432,710 _4567 Psyr_4568: Psyr_4568 - HesB/YadR/YfhF, at 5,432,773 to 5,433,123 _4568 Psyr_4569: Psyr_4569 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,433,388 to 5,434,422 _4569 Position (kb) 5432 5433 5434Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5431.909 kb on + strand, within Psyr_4567at 5431.910 kb on - strand, within Psyr_4567at 5431.910 kb on - strand, within Psyr_4567at 5431.910 kb on - strand, within Psyr_4567at 5432.181 kb on + strand, within Psyr_4567at 5432.181 kb on + strand, within Psyr_4567at 5432.182 kb on - strand, within Psyr_4567at 5432.182 kb on - strand, within Psyr_4567at 5432.182 kb on - strand, within Psyr_4567at 5432.222 kb on + strand, within Psyr_4567at 5432.222 kb on + strand, within Psyr_4567at 5432.223 kb on - strand, within Psyr_4567at 5432.324 kb on - strand, within Psyr_4567at 5432.324 kb on - strand, within Psyr_4567at 5432.545 kb on + strand, within Psyr_4567at 5433.274 kb on + strandat 5433.274 kb on + strandat 5433.281 kb on + strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.282 kb on - strandat 5433.288 kb on + strandat 5433.288 kb on + strandat 5433.288 kb on + strandat 5433.288 kb on + strandat 5433.288 kb on + strandat 5433.288 kb on + strandat 5433.289 kb on - strandat 5433.295 kb on + strandat 5433.295 kb on + strandat 5433.295 kb on + strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.296 kb on - strandat 5433.302 kb on + strandat 5433.302 kb on + strandat 5433.302 kb on + strandat 5433.302 kb on + strandat 5433.303 kb on - strandat 5433.303 kb on - strandat 5433.309 kb on + strandat 5433.309 kb on + strandat 5433.309 kb on + strandat 5433.309 kb on + strandat 5433.309 kb on + strandat 5433.316 kb on + strandat 5433.316 kb on + strandat 5433.317 kb on - strandat 5433.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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5,431,909 + Psyr_4567 0.27 +1.8
5,431,910 - Psyr_4567 0.27 +3.0
5,431,910 - Psyr_4567 0.27 +1.2
5,431,910 - Psyr_4567 0.27 +0.7
5,432,181 + Psyr_4567 0.52 -0.1
5,432,181 + Psyr_4567 0.52 +1.7
5,432,182 - Psyr_4567 0.52 +2.0
5,432,182 - Psyr_4567 0.52 -1.7
5,432,182 - Psyr_4567 0.52 +1.2
5,432,222 + Psyr_4567 0.55 -0.4
5,432,222 + Psyr_4567 0.55 +1.4
5,432,223 - Psyr_4567 0.55 +0.9
5,432,324 - Psyr_4567 0.65 +1.8
5,432,324 - Psyr_4567 0.65 +0.2
5,432,545 + Psyr_4567 0.85 +1.9
5,433,274 + -0.8
5,433,274 + +0.9
5,433,281 + +1.2
5,433,282 - +0.1
5,433,282 - -0.1
5,433,282 - -2.1
5,433,282 - -1.2
5,433,282 - -0.4
5,433,282 - +0.8
5,433,282 - -0.7
5,433,282 - +0.1
5,433,282 - -2.4
5,433,288 + +0.3
5,433,288 + +1.9
5,433,288 + +2.4
5,433,288 + -0.0
5,433,288 + +0.6
5,433,288 + +0.6
5,433,289 - -0.8
5,433,295 + +0.1
5,433,295 + -1.3
5,433,295 + +0.9
5,433,296 - -0.6
5,433,296 - +0.1
5,433,296 - +3.3
5,433,296 - -0.7
5,433,296 - +0.2
5,433,296 - -0.1
5,433,296 - +0.3
5,433,302 + -0.5
5,433,302 + -0.2
5,433,302 + +0.5
5,433,302 + +0.5
5,433,303 - -0.7
5,433,303 - +0.4
5,433,309 + -1.3
5,433,309 + -0.9
5,433,309 + +0.8
5,433,309 + -0.4
5,433,309 + -0.8
5,433,316 + +1.0
5,433,316 + -0.5
5,433,317 - -1.0
5,433,317 - -0.8

Or see this region's nucleotide sequence