Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4464 and Psyr_4465 overlap by 4 nucleotides Psyr_4465 and Psyr_4466 are separated by 269 nucleotides Psyr_4466 and Psyr_4467 are separated by 54 nucleotides Psyr_4467 and Psyr_4468 are separated by 61 nucleotides
Psyr_4464: Psyr_4464 - lipoprotein, putative, at 5,326,551 to 5,327,000
_4464
Psyr_4465: Psyr_4465 - conserved domain protein, at 5,326,997 to 5,327,650
_4465
Psyr_4466: Psyr_4466 - Thioredoxin, at 5,327,920 to 5,328,792
_4466
Psyr_4467: Psyr_4467 - conserved hypothetical protein, at 5,328,847 to 5,329,200
_4467
Psyr_4468: Psyr_4468 - conserved hypothetical protein, at 5,329,262 to 5,329,684
_4468
Position (kb) 5327
5328
5329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5327.169 kb on - strand, within Psyr_4465 at 5327.393 kb on + strand, within Psyr_4465 at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.659 kb on + strand at 5327.660 kb on - strand at 5327.660 kb on - strand at 5327.660 kb on - strand at 5327.660 kb on - strand at 5327.660 kb on - strand at 5327.682 kb on - strand at 5327.694 kb on + strand at 5327.695 kb on - strand at 5327.817 kb on + strand at 5327.817 kb on + strand at 5327.818 kb on - strand at 5327.818 kb on - strand at 5327.848 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.886 kb on + strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.887 kb on - strand at 5327.938 kb on + strand at 5327.938 kb on + strand at 5327.938 kb on + strand at 5327.938 kb on + strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5327.939 kb on - strand at 5328.082 kb on + strand, within Psyr_4466 at 5328.082 kb on + strand, within Psyr_4466 at 5328.083 kb on - strand, within Psyr_4466 at 5328.398 kb on - strand, within Psyr_4466 at 5328.631 kb on + strand, within Psyr_4466 at 5328.631 kb on + strand, within Psyr_4466 at 5328.683 kb on - strand, within Psyr_4466 at 5328.719 kb on + strand at 5328.720 kb on - strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.869 kb on + strand at 5328.870 kb on - strand at 5329.192 kb on - strand at 5329.192 kb on - strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.633 kb on + strand, within Psyr_4468 at 5329.633 kb on + strand, within Psyr_4468 at 5329.634 kb on - strand, within Psyr_4468 at 5329.639 kb on + strand, within Psyr_4468 at 5329.639 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.688 kb on + strand at 5329.688 kb on + strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 5,327,169 - Psyr_4465 0.26 +0.2 5,327,393 + Psyr_4465 0.61 +0.2 5,327,659 + -0.8 5,327,659 + +1.0 5,327,659 + +1.6 5,327,659 + -0.1 5,327,660 - +1.7 5,327,660 - +0.1 5,327,660 - +0.1 5,327,660 - +0.0 5,327,660 - -0.6 5,327,682 - +0.5 5,327,694 + +1.4 5,327,695 - -1.2 5,327,817 + -1.9 5,327,817 + +0.3 5,327,818 - +0.8 5,327,818 - -0.3 5,327,848 + -0.3 5,327,886 + +1.1 5,327,886 + -0.8 5,327,886 + +0.5 5,327,886 + +0.8 5,327,886 + -0.6 5,327,886 + +0.4 5,327,886 + -1.3 5,327,887 - +1.0 5,327,887 - -2.2 5,327,887 - -1.6 5,327,887 - +0.7 5,327,887 - -0.3 5,327,887 - +0.8 5,327,887 - -0.6 5,327,938 + -0.0 5,327,938 + +0.8 5,327,938 + +0.4 5,327,938 + -0.6 5,327,939 - -2.3 5,327,939 - +0.3 5,327,939 - +0.8 5,328,082 + Psyr_4466 0.19 +0.5 5,328,082 + Psyr_4466 0.19 -0.9 5,328,083 - Psyr_4466 0.19 +1.4 5,328,398 - Psyr_4466 0.55 +0.9 5,328,631 + Psyr_4466 0.81 +0.4 5,328,631 + Psyr_4466 0.81 +1.2 5,328,683 - Psyr_4466 0.87 +1.5 5,328,719 + -0.5 5,328,720 - -0.0 5,328,787 + +0.2 5,328,787 + +0.4 5,328,787 + +0.3 5,328,787 + +1.3 5,328,787 + -1.7 5,328,787 + +0.3 5,328,790 + +1.3 5,328,790 + +0.0 5,328,790 + -2.9 5,328,790 + +0.6 5,328,790 + -0.4 5,328,791 - +0.8 5,328,791 - -0.2 5,328,791 - +0.7 5,328,791 - -3.9 5,328,791 - -0.4 5,328,791 - -0.7 5,328,795 + +0.1 5,328,795 + +0.4 5,328,795 + +0.5 5,328,795 + +0.5 5,328,795 + +0.5 5,328,796 - +1.5 5,328,796 - +0.9 5,328,796 - +0.2 5,328,796 - +0.4 5,328,796 - -1.7 5,328,869 + -0.4 5,328,870 - +0.5 5,329,192 - +1.0 5,329,192 - -0.4 5,329,227 + -0.7 5,329,227 + +1.0 5,329,227 + -1.8 5,329,227 + -0.1 5,329,227 + -0.4 5,329,228 - -0.1 5,329,228 - +1.3 5,329,228 - +1.2 5,329,228 - -1.1 5,329,228 - -0.2 5,329,228 - +1.0 5,329,228 - +0.4 5,329,228 - -0.2 5,329,228 - +0.2 5,329,228 - +0.2 5,329,228 - -1.2 5,329,228 - -1.8 5,329,228 - +0.2 5,329,228 - -0.6 5,329,228 - +0.4 5,329,485 + Psyr_4468 0.53 +0.4 5,329,485 + Psyr_4468 0.53 -0.5 5,329,485 + Psyr_4468 0.53 +0.8 5,329,485 + Psyr_4468 0.53 -2.6 5,329,485 + Psyr_4468 0.53 -3.6 5,329,486 - Psyr_4468 0.53 +0.3 5,329,486 - Psyr_4468 0.53 -3.1 5,329,486 - Psyr_4468 0.53 +0.1 5,329,486 - Psyr_4468 0.53 +0.9 5,329,486 - Psyr_4468 0.53 -0.2 5,329,633 + Psyr_4468 0.88 -0.7 5,329,633 + Psyr_4468 0.88 +0.8 5,329,634 - Psyr_4468 0.88 -0.7 5,329,639 + Psyr_4468 0.89 -1.8 5,329,639 + Psyr_4468 0.89 +2.3 5,329,641 + Psyr_4468 0.90 +0.0 5,329,641 + Psyr_4468 0.90 -1.4 5,329,641 + Psyr_4468 0.90 -0.2 5,329,641 + Psyr_4468 0.90 +0.7 5,329,641 + Psyr_4468 0.90 -0.7 5,329,641 + Psyr_4468 0.90 +0.2 5,329,641 + Psyr_4468 0.90 +0.6 5,329,641 + Psyr_4468 0.90 -0.8 5,329,641 + Psyr_4468 0.90 -0.8 5,329,641 + Psyr_4468 0.90 -1.2 5,329,641 + Psyr_4468 0.90 -1.2 5,329,641 + Psyr_4468 0.90 +0.9 5,329,641 + Psyr_4468 0.90 +0.3 5,329,641 + Psyr_4468 0.90 -0.5 5,329,641 + Psyr_4468 0.90 -0.6 5,329,642 - -0.2 5,329,642 - +0.3 5,329,642 - -0.0 5,329,642 - -1.8 5,329,642 - +0.7 5,329,688 + +0.4 5,329,688 + -0.8 5,329,689 - +0.4 5,329,689 - +0.4 5,329,689 - -0.9 5,329,689 - +1.1 5,329,689 - +0.8 5,329,689 - +1.3
Or see this region's nucleotide sequence