Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4266

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4265 and Psyr_4266 are separated by 139 nucleotidesPsyr_4266 and Psyr_4267 are separated by 139 nucleotides Psyr_4265: Psyr_4265 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,083,463 to 5,087,299 _4265 Psyr_4266: Psyr_4266 - transcriptional regulator, LuxR family, at 5,087,439 to 5,088,431 _4266 Psyr_4267: Psyr_4267 - conserved hypothetical protein, at 5,088,571 to 5,089,464 _4267 Position (kb) 5087 5088 5089Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.445 kb on + strand, within Psyr_4265at 5086.446 kb on - strand, within Psyr_4265at 5086.446 kb on - strand, within Psyr_4265at 5086.446 kb on - strand, within Psyr_4265at 5086.484 kb on + strand, within Psyr_4265at 5086.577 kb on + strand, within Psyr_4265at 5086.577 kb on + strand, within Psyr_4265at 5086.577 kb on + strand, within Psyr_4265at 5086.577 kb on + strand, within Psyr_4265at 5086.578 kb on - strand, within Psyr_4265at 5086.578 kb on - strand, within Psyr_4265at 5086.578 kb on - strand, within Psyr_4265at 5086.578 kb on - strand, within Psyr_4265at 5086.854 kb on + strand, within Psyr_4265at 5086.854 kb on + strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.855 kb on - strand, within Psyr_4265at 5086.945 kb on - strandat 5087.003 kb on + strandat 5087.018 kb on + strandat 5087.019 kb on - strandat 5087.019 kb on - strandat 5087.222 kb on + strandat 5087.356 kb on + strandat 5087.356 kb on + strandat 5087.356 kb on + strandat 5087.356 kb on + strandat 5087.356 kb on + strandat 5087.356 kb on + strandat 5087.357 kb on - strandat 5087.357 kb on - strandat 5087.362 kb on + strandat 5087.363 kb on - strandat 5087.363 kb on - strandat 5087.363 kb on - strandat 5087.363 kb on - strandat 5087.363 kb on - strandat 5087.363 kb on - strandat 5087.409 kb on + strandat 5087.436 kb on - strandat 5087.450 kb on + strandat 5087.450 kb on + strandat 5087.450 kb on + strandat 5087.451 kb on - strandat 5087.451 kb on - strandat 5087.451 kb on - strandat 5087.451 kb on - strandat 5087.540 kb on + strand, within Psyr_4266at 5087.540 kb on + strand, within Psyr_4266at 5087.541 kb on - strand, within Psyr_4266at 5087.814 kb on + strand, within Psyr_4266at 5087.815 kb on - strand, within Psyr_4266at 5087.839 kb on + strand, within Psyr_4266at 5087.979 kb on + strand, within Psyr_4266at 5087.979 kb on + strand, within Psyr_4266at 5087.980 kb on - strand, within Psyr_4266at 5087.980 kb on - strand, within Psyr_4266at 5087.980 kb on - strand, within Psyr_4266at 5088.021 kb on + strand, within Psyr_4266at 5088.022 kb on - strand, within Psyr_4266at 5088.173 kb on + strand, within Psyr_4266at 5088.214 kb on + strand, within Psyr_4266at 5088.214 kb on + strand, within Psyr_4266at 5088.214 kb on + strand, within Psyr_4266at 5088.214 kb on + strand, within Psyr_4266at 5088.214 kb on + strand, within Psyr_4266at 5088.215 kb on - strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.300 kb on + strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.301 kb on - strand, within Psyr_4266at 5088.326 kb on + strand, within Psyr_4266at 5088.326 kb on + strand, within Psyr_4266at 5088.327 kb on - strand, within Psyr_4266at 5088.327 kb on - strand, within Psyr_4266at 5088.327 kb on - strand, within Psyr_4266at 5088.327 kb on - strand, within Psyr_4266at 5088.327 kb on - strand, within Psyr_4266at 5088.366 kb on + strandat 5088.366 kb on + strandat 5088.366 kb on + strandat 5088.366 kb on + strandat 5088.367 kb on - strandat 5088.409 kb on + strandat 5088.409 kb on + strandat 5088.410 kb on - strandat 5088.410 kb on - strandat 5088.410 kb on - strandat 5088.445 kb on + strandat 5088.469 kb on + strandat 5088.469 kb on + strandat 5088.512 kb on + strandat 5088.512 kb on + strandat 5088.513 kb on - strandat 5088.525 kb on - strandat 5088.537 kb on - strandat 5088.537 kb on - strandat 5088.712 kb on + strand, within Psyr_4267at 5088.712 kb on + strand, within Psyr_4267at 5088.712 kb on + strand, within Psyr_4267at 5088.797 kb on - strand, within Psyr_4267at 5089.010 kb on + strand, within Psyr_4267at 5089.010 kb on + strand, within Psyr_4267at 5089.010 kb on + strand, within Psyr_4267at 5089.010 kb on + strand, within Psyr_4267at 5089.011 kb on - strand, within Psyr_4267at 5089.011 kb on - strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.105 kb on + strand, within Psyr_4267at 5089.106 kb on - strand, within Psyr_4267at 5089.106 kb on - strand, within Psyr_4267at 5089.106 kb on - strand, within Psyr_4267at 5089.153 kb on - strand, within Psyr_4267at 5089.154 kb on + strand, within Psyr_4267at 5089.155 kb on - strand, within Psyr_4267at 5089.155 kb on - strand, within Psyr_4267at 5089.155 kb on - strand, within Psyr_4267at 5089.155 kb on - strand, within Psyr_4267at 5089.155 kb on - strand, within Psyr_4267at 5089.198 kb on + strand, within Psyr_4267at 5089.261 kb on + strand, within Psyr_4267at 5089.261 kb on + strand, within Psyr_4267at 5089.261 kb on + strand, within Psyr_4267at 5089.262 kb on - strand, within Psyr_4267at 5089.262 kb on - strand, within Psyr_4267at 5089.262 kb on - strand, within Psyr_4267at 5089.262 kb on - strand, within Psyr_4267at 5089.262 kb on - strand, within Psyr_4267at 5089.348 kb on + strand, within Psyr_4267at 5089.348 kb on + strand, within Psyr_4267at 5089.348 kb on + strand, within Psyr_4267at 5089.349 kb on - strand, within Psyr_4267at 5089.349 kb on - strand, within Psyr_4267at 5089.393 kb on + strandat 5089.394 kb on - strandat 5089.394 kb on - strandat 5089.429 kb on + strandat 5089.430 kb on - strandat 5089.430 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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5,086,445 + Psyr_4265 0.78 +0.3
5,086,445 + Psyr_4265 0.78 -1.4
5,086,445 + Psyr_4265 0.78 +0.9
5,086,445 + Psyr_4265 0.78 -1.0
5,086,445 + Psyr_4265 0.78 -0.1
5,086,445 + Psyr_4265 0.78 -1.2
5,086,445 + Psyr_4265 0.78 +0.6
5,086,445 + Psyr_4265 0.78 -0.7
5,086,446 - Psyr_4265 0.78 -1.2
5,086,446 - Psyr_4265 0.78 -0.8
5,086,446 - Psyr_4265 0.78 -3.0
5,086,484 + Psyr_4265 0.79 +0.3
5,086,577 + Psyr_4265 0.81 -0.4
5,086,577 + Psyr_4265 0.81 -0.3
5,086,577 + Psyr_4265 0.81 +0.2
5,086,577 + Psyr_4265 0.81 +1.8
5,086,578 - Psyr_4265 0.81 +0.7
5,086,578 - Psyr_4265 0.81 +1.4
5,086,578 - Psyr_4265 0.81 +2.2
5,086,578 - Psyr_4265 0.81 -0.3
5,086,854 + Psyr_4265 0.88 +0.3
5,086,854 + Psyr_4265 0.88 +0.0
5,086,855 - Psyr_4265 0.88 +0.5
5,086,855 - Psyr_4265 0.88 +1.8
5,086,855 - Psyr_4265 0.88 -0.4
5,086,855 - Psyr_4265 0.88 -0.3
5,086,855 - Psyr_4265 0.88 -0.5
5,086,855 - Psyr_4265 0.88 +0.8
5,086,945 - -0.1
5,087,003 + +0.4
5,087,018 + +0.1
5,087,019 - -0.4
5,087,019 - -1.7
5,087,222 + -2.9
5,087,356 + -0.1
5,087,356 + -0.0
5,087,356 + +1.1
5,087,356 + -0.7
5,087,356 + +3.0
5,087,356 + +1.4
5,087,357 - -2.7
5,087,357 - -0.4
5,087,362 + -2.3
5,087,363 - +0.7
5,087,363 - -0.8
5,087,363 - +3.0
5,087,363 - -1.1
5,087,363 - -0.3
5,087,363 - +1.3
5,087,409 + -0.0
5,087,436 - +1.2
5,087,450 + +3.7
5,087,450 + +0.5
5,087,450 + -0.9
5,087,451 - +0.1
5,087,451 - -2.4
5,087,451 - -0.6
5,087,451 - +0.1
5,087,540 + Psyr_4266 0.10 -0.9
5,087,540 + Psyr_4266 0.10 -0.0
5,087,541 - Psyr_4266 0.10 +2.0
5,087,814 + Psyr_4266 0.38 -0.5
5,087,815 - Psyr_4266 0.38 +0.0
5,087,839 + Psyr_4266 0.40 +0.3
5,087,979 + Psyr_4266 0.54 -0.4
5,087,979 + Psyr_4266 0.54 -1.1
5,087,980 - Psyr_4266 0.54 -0.1
5,087,980 - Psyr_4266 0.54 -0.3
5,087,980 - Psyr_4266 0.54 +0.2
5,088,021 + Psyr_4266 0.59 +0.6
5,088,022 - Psyr_4266 0.59 -0.2
5,088,173 + Psyr_4266 0.74 -0.2
5,088,214 + Psyr_4266 0.78 +0.9
5,088,214 + Psyr_4266 0.78 -0.5
5,088,214 + Psyr_4266 0.78 +0.6
5,088,214 + Psyr_4266 0.78 -0.2
5,088,214 + Psyr_4266 0.78 +2.0
5,088,215 - Psyr_4266 0.78 +1.2
5,088,300 + Psyr_4266 0.87 -0.3
5,088,300 + Psyr_4266 0.87 -1.9
5,088,300 + Psyr_4266 0.87 -1.2
5,088,300 + Psyr_4266 0.87 +1.2
5,088,300 + Psyr_4266 0.87 +1.1
5,088,300 + Psyr_4266 0.87 +1.1
5,088,300 + Psyr_4266 0.87 +3.0
5,088,300 + Psyr_4266 0.87 +0.8
5,088,300 + Psyr_4266 0.87 +0.0
5,088,300 + Psyr_4266 0.87 +0.1
5,088,301 - Psyr_4266 0.87 +0.8
5,088,301 - Psyr_4266 0.87 +0.8
5,088,301 - Psyr_4266 0.87 -2.5
5,088,301 - Psyr_4266 0.87 -0.8
5,088,301 - Psyr_4266 0.87 -0.9
5,088,301 - Psyr_4266 0.87 +1.0
5,088,301 - Psyr_4266 0.87 +0.5
5,088,301 - Psyr_4266 0.87 -0.3
5,088,301 - Psyr_4266 0.87 +1.2
5,088,301 - Psyr_4266 0.87 +0.7
5,088,301 - Psyr_4266 0.87 +1.0
5,088,301 - Psyr_4266 0.87 -1.9
5,088,301 - Psyr_4266 0.87 +0.7
5,088,301 - Psyr_4266 0.87 -1.6
5,088,301 - Psyr_4266 0.87 +0.7
5,088,301 - Psyr_4266 0.87 +0.6
5,088,326 + Psyr_4266 0.89 +0.8
5,088,326 + Psyr_4266 0.89 +0.2
5,088,327 - Psyr_4266 0.89 +0.7
5,088,327 - Psyr_4266 0.89 -0.1
5,088,327 - Psyr_4266 0.89 +0.2
5,088,327 - Psyr_4266 0.89 +0.7
5,088,327 - Psyr_4266 0.89 -1.9
5,088,366 + -1.7
5,088,366 + +0.4
5,088,366 + +0.3
5,088,366 + -3.3
5,088,367 - +0.7
5,088,409 + -3.3
5,088,409 + -0.5
5,088,410 - -0.3
5,088,410 - +0.3
5,088,410 - +0.9
5,088,445 + -0.6
5,088,469 + +0.4
5,088,469 + +0.9
5,088,512 + +0.4
5,088,512 + -0.1
5,088,513 - +0.5
5,088,525 - -0.8
5,088,537 - +0.9
5,088,537 - -0.7
5,088,712 + Psyr_4267 0.16 +0.5
5,088,712 + Psyr_4267 0.16 -0.8
5,088,712 + Psyr_4267 0.16 +0.5
5,088,797 - Psyr_4267 0.25 -0.7
5,089,010 + Psyr_4267 0.49 -1.0
5,089,010 + Psyr_4267 0.49 +1.1
5,089,010 + Psyr_4267 0.49 +0.4
5,089,010 + Psyr_4267 0.49 -0.2
5,089,011 - Psyr_4267 0.49 -0.3
5,089,011 - Psyr_4267 0.49 -0.2
5,089,105 + Psyr_4267 0.60 +0.8
5,089,105 + Psyr_4267 0.60 +0.5
5,089,105 + Psyr_4267 0.60 +1.2
5,089,105 + Psyr_4267 0.60 +0.5
5,089,105 + Psyr_4267 0.60 +0.2
5,089,105 + Psyr_4267 0.60 -1.5
5,089,106 - Psyr_4267 0.60 +0.2
5,089,106 - Psyr_4267 0.60 -0.9
5,089,106 - Psyr_4267 0.60 -0.8
5,089,153 - Psyr_4267 0.65 +1.1
5,089,154 + Psyr_4267 0.65 -2.4
5,089,155 - Psyr_4267 0.65 +0.4
5,089,155 - Psyr_4267 0.65 -0.2
5,089,155 - Psyr_4267 0.65 -1.3
5,089,155 - Psyr_4267 0.65 -0.5
5,089,155 - Psyr_4267 0.65 -0.6
5,089,198 + Psyr_4267 0.70 +0.4
5,089,261 + Psyr_4267 0.77 -0.8
5,089,261 + Psyr_4267 0.77 -0.2
5,089,261 + Psyr_4267 0.77 -0.4
5,089,262 - Psyr_4267 0.77 +1.1
5,089,262 - Psyr_4267 0.77 -0.8
5,089,262 - Psyr_4267 0.77 +1.1
5,089,262 - Psyr_4267 0.77 -0.7
5,089,262 - Psyr_4267 0.77 -0.2
5,089,348 + Psyr_4267 0.87 -2.7
5,089,348 + Psyr_4267 0.87 -0.6
5,089,348 + Psyr_4267 0.87 -0.2
5,089,349 - Psyr_4267 0.87 +1.3
5,089,349 - Psyr_4267 0.87 +0.4
5,089,393 + -0.4
5,089,394 - -1.4
5,089,394 - +0.1
5,089,429 + -2.2
5,089,430 - -0.3
5,089,430 - +0.4

Or see this region's nucleotide sequence