Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4013 and Psyr_4014 are separated by 156 nucleotides Psyr_4014 and Psyr_4015 are separated by 855 nucleotides
Psyr_4013: Psyr_4013 - Glutaconate CoA-transferase, at 4,780,393 to 4,781,250
_4013
Psyr_4014: Psyr_4014 - regulatory protein, IclR, at 4,781,407 to 4,782,249
_4014
Psyr_4015: Psyr_4015 - conserved domain protein, at 4,783,105 to 4,783,302
_4015
Position (kb) 4781
4782
4783 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.521 kb on - strand, within Psyr_4013 at 4780.541 kb on + strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.875 kb on - strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013 at 4781.412 kb on + strand at 4781.413 kb on - strand at 4781.424 kb on + strand at 4781.425 kb on - strand at 4781.546 kb on + strand, within Psyr_4014 at 4781.546 kb on + strand, within Psyr_4014 at 4781.546 kb on + strand, within Psyr_4014 at 4781.547 kb on - strand, within Psyr_4014 at 4781.547 kb on - strand, within Psyr_4014 at 4781.547 kb on - strand, within Psyr_4014 at 4781.547 kb on - strand, within Psyr_4014 at 4781.699 kb on + strand, within Psyr_4014 at 4781.699 kb on + strand, within Psyr_4014 at 4781.699 kb on + strand, within Psyr_4014 at 4781.699 kb on + strand, within Psyr_4014 at 4781.699 kb on + strand, within Psyr_4014 at 4781.700 kb on - strand, within Psyr_4014 at 4781.700 kb on - strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.831 kb on + strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.832 kb on - strand, within Psyr_4014 at 4781.892 kb on + strand, within Psyr_4014 at 4781.892 kb on + strand, within Psyr_4014 at 4781.903 kb on + strand, within Psyr_4014 at 4781.903 kb on + strand, within Psyr_4014 at 4781.904 kb on - strand, within Psyr_4014 at 4781.942 kb on + strand, within Psyr_4014 at 4781.943 kb on - strand, within Psyr_4014 at 4781.943 kb on - strand, within Psyr_4014 at 4781.981 kb on + strand, within Psyr_4014 at 4781.981 kb on + strand, within Psyr_4014 at 4781.982 kb on - strand, within Psyr_4014 at 4781.982 kb on - strand, within Psyr_4014 at 4781.982 kb on - strand, within Psyr_4014 at 4781.985 kb on + strand, within Psyr_4014 at 4781.985 kb on + strand, within Psyr_4014 at 4781.985 kb on + strand, within Psyr_4014 at 4782.005 kb on + strand, within Psyr_4014 at 4782.006 kb on - strand, within Psyr_4014 at 4782.231 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on + strand at 4782.260 kb on - strand at 4782.261 kb on - strand at 4782.261 kb on - strand at 4782.261 kb on - strand at 4782.261 kb on - strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.264 kb on + strand at 4782.265 kb on - strand at 4782.265 kb on - strand at 4782.265 kb on - strand at 4782.265 kb on - strand at 4782.265 kb on - strand at 4782.265 kb on - strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.379 kb on + strand at 4782.380 kb on - strand at 4782.380 kb on - strand at 4782.380 kb on - strand at 4782.380 kb on - strand at 4782.380 kb on - strand at 4782.380 kb on - strand at 4782.383 kb on + strand at 4782.383 kb on + strand at 4782.383 kb on + strand at 4782.384 kb on - strand at 4782.384 kb on - strand at 4782.384 kb on - strand at 4782.384 kb on - strand at 4782.384 kb on - strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.385 kb on + strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.386 kb on - strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.389 kb on + strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.390 kb on - strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.391 kb on + strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.392 kb on - strand at 4782.398 kb on - strand at 4782.494 kb on + strand at 4782.494 kb on + strand at 4782.586 kb on + strand at 4782.588 kb on + strand at 4782.652 kb on + strand at 4782.653 kb on - strand at 4782.653 kb on - strand at 4782.659 kb on + strand at 4782.660 kb on - strand at 4782.660 kb on - strand at 4782.660 kb on - strand at 4782.661 kb on + strand at 4782.693 kb on - strand at 4782.693 kb on - strand at 4782.739 kb on + strand at 4782.740 kb on - strand at 4782.758 kb on + strand at 4782.759 kb on - strand at 4782.759 kb on - strand at 4782.762 kb on - strand at 4782.931 kb on + strand at 4782.931 kb on + strand at 4782.931 kb on + strand at 4782.932 kb on - strand at 4782.932 kb on - strand at 4782.932 kb on - strand at 4782.932 kb on - strand at 4782.932 kb on - strand at 4783.019 kb on - strand at 4783.019 kb on - strand at 4783.027 kb on + strand at 4783.027 kb on + strand at 4783.027 kb on + strand at 4783.028 kb on - strand at 4783.049 kb on + strand at 4783.049 kb on + strand at 4783.049 kb on + strand at 4783.049 kb on + strand at 4783.049 kb on + strand at 4783.050 kb on - strand at 4783.050 kb on - strand at 4783.050 kb on - strand at 4783.098 kb on + strand at 4783.098 kb on + strand at 4783.102 kb on - strand at 4783.153 kb on + strand, within Psyr_4015 at 4783.154 kb on - strand, within Psyr_4015 at 4783.166 kb on - strand, within Psyr_4015 at 4783.186 kb on + strand, within Psyr_4015
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,780,460 + -1.3 4,780,460 + -2.8 4,780,460 + +2.9 4,780,460 + -2.2 4,780,460 + -0.1 4,780,460 + -1.9 4,780,460 + -3.1 4,780,460 + -1.7 4,780,460 + -1.6 4,780,460 + -0.9 4,780,460 + -3.7 4,780,460 + -1.6 4,780,461 - -0.4 4,780,461 - -1.4 4,780,461 - -2.5 4,780,461 - -3.1 4,780,461 - -1.1 4,780,461 - -2.3 4,780,461 - +0.2 4,780,461 - -0.5 4,780,461 - -2.4 4,780,461 - +0.3 4,780,461 - -0.5 4,780,520 + Psyr_4013 0.15 -1.0 4,780,520 + Psyr_4013 0.15 -2.3 4,780,520 + Psyr_4013 0.15 -2.3 4,780,521 - Psyr_4013 0.15 -3.4 4,780,541 + Psyr_4013 0.17 +1.3 4,780,542 - Psyr_4013 0.17 -0.1 4,780,542 - Psyr_4013 0.17 -0.3 4,780,875 - Psyr_4013 0.56 -2.6 4,780,915 + Psyr_4013 0.61 -1.8 4,780,915 + Psyr_4013 0.61 -1.3 4,780,915 + Psyr_4013 0.61 -0.1 4,780,919 + Psyr_4013 0.61 -0.5 4,780,919 + Psyr_4013 0.61 -0.1 4,780,919 + Psyr_4013 0.61 -0.0 4,780,919 + Psyr_4013 0.61 +0.0 4,780,920 - Psyr_4013 0.61 -0.2 4,780,920 - Psyr_4013 0.61 +0.5 4,780,920 - Psyr_4013 0.61 -1.9 4,780,920 - Psyr_4013 0.61 -0.4 4,781,081 + Psyr_4013 0.80 -1.1 4,781,081 + Psyr_4013 0.80 -0.9 4,781,081 + Psyr_4013 0.80 +0.5 4,781,082 - Psyr_4013 0.80 -2.7 4,781,082 - Psyr_4013 0.80 +0.0 4,781,412 + -1.5 4,781,413 - +0.5 4,781,424 + -1.6 4,781,425 - +0.3 4,781,546 + Psyr_4014 0.16 +0.2 4,781,546 + Psyr_4014 0.16 -0.7 4,781,546 + Psyr_4014 0.16 +0.2 4,781,547 - Psyr_4014 0.17 -1.3 4,781,547 - Psyr_4014 0.17 +0.1 4,781,547 - Psyr_4014 0.17 -2.7 4,781,547 - Psyr_4014 0.17 -1.0 4,781,699 + Psyr_4014 0.35 -2.3 4,781,699 + Psyr_4014 0.35 +0.5 4,781,699 + Psyr_4014 0.35 -2.1 4,781,699 + Psyr_4014 0.35 -0.4 4,781,699 + Psyr_4014 0.35 -2.6 4,781,700 - Psyr_4014 0.35 +0.3 4,781,700 - Psyr_4014 0.35 -0.0 4,781,831 + Psyr_4014 0.50 -1.5 4,781,831 + Psyr_4014 0.50 -3.4 4,781,831 + Psyr_4014 0.50 -0.6 4,781,831 + Psyr_4014 0.50 +0.6 4,781,831 + Psyr_4014 0.50 -0.8 4,781,831 + Psyr_4014 0.50 -0.4 4,781,831 + Psyr_4014 0.50 -0.1 4,781,831 + Psyr_4014 0.50 -0.5 4,781,832 - Psyr_4014 0.50 -2.4 4,781,832 - Psyr_4014 0.50 -2.3 4,781,832 - Psyr_4014 0.50 -2.7 4,781,832 - Psyr_4014 0.50 -0.2 4,781,832 - Psyr_4014 0.50 -3.1 4,781,832 - Psyr_4014 0.50 -0.7 4,781,832 - Psyr_4014 0.50 -2.8 4,781,892 + Psyr_4014 0.58 -2.1 4,781,892 + Psyr_4014 0.58 +0.1 4,781,903 + Psyr_4014 0.59 -1.3 4,781,903 + Psyr_4014 0.59 -1.3 4,781,904 - Psyr_4014 0.59 -1.0 4,781,942 + Psyr_4014 0.63 +0.5 4,781,943 - Psyr_4014 0.64 +3.3 4,781,943 - Psyr_4014 0.64 -1.1 4,781,981 + Psyr_4014 0.68 -0.4 4,781,981 + Psyr_4014 0.68 -1.1 4,781,982 - Psyr_4014 0.68 -1.2 4,781,982 - Psyr_4014 0.68 -2.3 4,781,982 - Psyr_4014 0.68 -1.4 4,781,985 + Psyr_4014 0.69 -2.5 4,781,985 + Psyr_4014 0.69 +0.4 4,781,985 + Psyr_4014 0.69 -1.7 4,782,005 + Psyr_4014 0.71 -0.5 4,782,006 - Psyr_4014 0.71 -2.3 4,782,231 + -0.5 4,782,260 + -2.3 4,782,260 + -0.3 4,782,260 + -1.3 4,782,260 + +1.4 4,782,260 + +0.6 4,782,260 + +0.9 4,782,260 - -0.0 4,782,261 - -1.4 4,782,261 - -1.0 4,782,261 - -3.7 4,782,261 - -0.4 4,782,264 + -1.4 4,782,264 + -0.5 4,782,264 + -1.1 4,782,264 + -1.8 4,782,264 + -0.1 4,782,264 + -0.9 4,782,264 + +0.2 4,782,264 + -0.7 4,782,264 + +0.8 4,782,265 - -0.5 4,782,265 - +0.6 4,782,265 - -0.9 4,782,265 - +0.2 4,782,265 - +0.0 4,782,265 - -2.3 4,782,379 + +0.4 4,782,379 + -1.8 4,782,379 + -1.6 4,782,379 + +0.1 4,782,379 + -0.7 4,782,379 + -0.3 4,782,379 + -0.7 4,782,380 - +1.3 4,782,380 - +0.7 4,782,380 - -1.9 4,782,380 - +1.5 4,782,380 - -2.6 4,782,380 - -1.1 4,782,383 + +0.9 4,782,383 + -0.3 4,782,383 + -1.1 4,782,384 - -0.4 4,782,384 - -2.1 4,782,384 - -1.8 4,782,384 - +0.5 4,782,384 - -2.0 4,782,385 + -0.1 4,782,385 + +0.4 4,782,385 + +1.0 4,782,385 + +0.9 4,782,385 + -0.7 4,782,385 + -1.3 4,782,385 + -1.2 4,782,385 + -1.6 4,782,385 + -0.8 4,782,385 + -0.5 4,782,386 - +0.5 4,782,386 - -1.6 4,782,386 - -0.8 4,782,386 - -0.3 4,782,386 - -3.1 4,782,386 - -0.9 4,782,386 - -0.4 4,782,386 - -0.0 4,782,386 - -1.5 4,782,389 + -1.5 4,782,389 + -0.4 4,782,389 + -1.2 4,782,389 + +0.3 4,782,389 + -0.5 4,782,389 + -0.4 4,782,389 + +0.1 4,782,389 + +0.9 4,782,389 + -0.0 4,782,389 + -1.2 4,782,389 + -1.1 4,782,390 - -0.5 4,782,390 - -0.2 4,782,390 - -1.8 4,782,390 - -0.4 4,782,390 - -1.3 4,782,390 - -0.6 4,782,390 - -2.1 4,782,390 - -2.4 4,782,390 - -1.5 4,782,390 - -0.2 4,782,390 - -0.6 4,782,390 - -2.4 4,782,391 + +0.3 4,782,391 + -1.8 4,782,391 + -0.3 4,782,391 + +0.2 4,782,391 + +1.2 4,782,391 + +0.5 4,782,391 + -1.5 4,782,391 + +0.2 4,782,391 + +0.0 4,782,392 - -3.5 4,782,392 - -0.9 4,782,392 - -1.1 4,782,392 - +0.5 4,782,392 - -0.4 4,782,392 - -1.5 4,782,392 - -1.8 4,782,398 - +0.2 4,782,494 + -0.5 4,782,494 + -2.3 4,782,586 + -2.0 4,782,588 + -1.6 4,782,652 + -0.2 4,782,653 - -1.3 4,782,653 - +0.5 4,782,659 + -2.0 4,782,660 - -0.1 4,782,660 - -1.4 4,782,660 - -0.5 4,782,661 + -0.0 4,782,693 - -1.6 4,782,693 - -0.1 4,782,739 + -2.2 4,782,740 - -2.0 4,782,758 + +0.5 4,782,759 - -1.6 4,782,759 - -2.2 4,782,762 - -1.5 4,782,931 + -1.2 4,782,931 + -1.5 4,782,931 + +0.3 4,782,932 - -0.5 4,782,932 - -1.1 4,782,932 - -1.8 4,782,932 - -0.2 4,782,932 - -0.3 4,783,019 - -0.9 4,783,019 - -2.3 4,783,027 + -0.0 4,783,027 + -1.8 4,783,027 + -0.7 4,783,028 - +0.9 4,783,049 + -3.3 4,783,049 + -0.1 4,783,049 + -0.4 4,783,049 + +1.1 4,783,049 + -1.5 4,783,050 - -3.8 4,783,050 - -2.1 4,783,050 - -2.0 4,783,098 + -3.0 4,783,098 + -2.5 4,783,102 - -2.7 4,783,153 + Psyr_4015 0.24 -1.1 4,783,154 - Psyr_4015 0.25 -0.7 4,783,166 - Psyr_4015 0.31 +0.9 4,783,186 + Psyr_4015 0.41 -1.1
Or see this region's nucleotide sequence