Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4010 and Psyr_4011 are separated by 211 nucleotides Psyr_4011 and Psyr_4012 overlap by 1 nucleotides Psyr_4012 and Psyr_4013 overlap by 1 nucleotides
Psyr_4010: Psyr_4010 - Citrate-proton symport, at 4,776,902 to 4,778,203
_4010
Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614
_4011
Psyr_4012: Psyr_4012 - Glutaconate CoA-transferase, at 4,779,614 to 4,780,393
_4012
Psyr_4013: Psyr_4013 - Glutaconate CoA-transferase, at 4,780,393 to 4,781,250
_4013
Position (kb) 4778
4779
4780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4777.428 kb on + strand, within Psyr_4010 at 4777.429 kb on - strand, within Psyr_4010 at 4777.713 kb on + strand, within Psyr_4010 at 4777.714 kb on - strand, within Psyr_4010 at 4777.728 kb on + strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.729 kb on - strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.767 kb on + strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.768 kb on - strand, within Psyr_4010 at 4777.786 kb on - strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.863 kb on + strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4777.864 kb on - strand, within Psyr_4010 at 4778.070 kb on + strand, within Psyr_4010 at 4778.071 kb on - strand, within Psyr_4010 at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.088 kb on + strand at 4778.089 kb on - strand at 4778.089 kb on - strand at 4778.089 kb on - strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.092 kb on + strand at 4778.093 kb on - strand at 4778.093 kb on - strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.094 kb on + strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.095 kb on - strand at 4778.175 kb on + strand at 4778.175 kb on + strand at 4778.175 kb on + strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.176 kb on - strand at 4778.197 kb on + strand at 4778.197 kb on + strand at 4778.198 kb on - strand at 4778.198 kb on - strand at 4778.198 kb on - strand at 4778.204 kb on + strand at 4778.205 kb on - strand at 4778.230 kb on - strand at 4778.416 kb on + strand at 4778.706 kb on - strand, within Psyr_4011 at 4779.373 kb on - strand, within Psyr_4011 at 4779.582 kb on - strand at 4779.599 kb on + strand at 4779.599 kb on + strand at 4779.599 kb on + strand at 4779.600 kb on - strand at 4779.600 kb on - strand at 4780.045 kb on - strand, within Psyr_4012 at 4780.160 kb on + strand, within Psyr_4012 at 4780.248 kb on + strand, within Psyr_4012 at 4780.249 kb on - strand, within Psyr_4012 at 4780.249 kb on - strand, within Psyr_4012 at 4780.256 kb on + strand, within Psyr_4012 at 4780.276 kb on + strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.386 kb on + strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.394 kb on + strand at 4780.395 kb on - strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.521 kb on - strand, within Psyr_4013 at 4780.541 kb on + strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,777,428 + Psyr_4010 0.40 +0.8 4,777,429 - Psyr_4010 0.40 -0.1 4,777,713 + Psyr_4010 0.62 +1.1 4,777,714 - Psyr_4010 0.62 -0.3 4,777,728 + Psyr_4010 0.63 +0.7 4,777,729 - Psyr_4010 0.64 -1.8 4,777,729 - Psyr_4010 0.64 -2.2 4,777,729 - Psyr_4010 0.64 -0.6 4,777,729 - Psyr_4010 0.64 -1.0 4,777,767 + Psyr_4010 0.66 -1.0 4,777,767 + Psyr_4010 0.66 +0.9 4,777,767 + Psyr_4010 0.66 -0.6 4,777,767 + Psyr_4010 0.66 -0.5 4,777,767 + Psyr_4010 0.66 +0.3 4,777,767 + Psyr_4010 0.66 +1.9 4,777,767 + Psyr_4010 0.66 +1.6 4,777,767 + Psyr_4010 0.66 -1.0 4,777,767 + Psyr_4010 0.66 +1.1 4,777,767 + Psyr_4010 0.66 -1.2 4,777,767 + Psyr_4010 0.66 +0.2 4,777,767 + Psyr_4010 0.66 -0.9 4,777,767 + Psyr_4010 0.66 -1.0 4,777,767 + Psyr_4010 0.66 +0.2 4,777,767 + Psyr_4010 0.66 +0.2 4,777,768 - Psyr_4010 0.67 -1.1 4,777,768 - Psyr_4010 0.67 -2.0 4,777,768 - Psyr_4010 0.67 -1.1 4,777,768 - Psyr_4010 0.67 +0.7 4,777,768 - Psyr_4010 0.67 -1.6 4,777,768 - Psyr_4010 0.67 -1.5 4,777,768 - Psyr_4010 0.67 -0.7 4,777,768 - Psyr_4010 0.67 -1.4 4,777,768 - Psyr_4010 0.67 +0.8 4,777,768 - Psyr_4010 0.67 +0.9 4,777,768 - Psyr_4010 0.67 -2.0 4,777,786 - Psyr_4010 0.68 -0.5 4,777,863 + Psyr_4010 0.74 +1.8 4,777,863 + Psyr_4010 0.74 -0.6 4,777,863 + Psyr_4010 0.74 -0.1 4,777,864 - Psyr_4010 0.74 -0.4 4,777,864 - Psyr_4010 0.74 -1.7 4,777,864 - Psyr_4010 0.74 +0.5 4,778,070 + Psyr_4010 0.90 +0.5 4,778,071 - Psyr_4010 0.90 -1.4 4,778,088 + -0.1 4,778,088 + -0.8 4,778,088 + -3.6 4,778,088 + -0.6 4,778,088 + +0.3 4,778,089 - -1.2 4,778,089 - +1.2 4,778,089 - -2.3 4,778,092 + -0.8 4,778,092 + -2.1 4,778,092 + +0.3 4,778,092 + -0.9 4,778,092 + +0.3 4,778,092 + -1.0 4,778,093 - -1.8 4,778,093 - -2.3 4,778,094 + -0.8 4,778,094 + -2.8 4,778,094 + -1.2 4,778,094 + -0.6 4,778,094 + +1.0 4,778,094 + -2.3 4,778,094 + +1.5 4,778,094 + +0.3 4,778,094 + -0.8 4,778,094 + +1.0 4,778,094 + +0.2 4,778,094 + +0.9 4,778,094 + +1.5 4,778,094 + -0.5 4,778,094 + -0.8 4,778,094 + +1.0 4,778,095 - -2.9 4,778,095 - -1.2 4,778,095 - -1.3 4,778,095 - +0.1 4,778,095 - -3.6 4,778,095 - +0.1 4,778,095 - +0.5 4,778,095 - -1.0 4,778,095 - -2.1 4,778,095 - -1.5 4,778,095 - -2.4 4,778,095 - -1.0 4,778,095 - -3.2 4,778,095 - -2.7 4,778,095 - +0.7 4,778,095 - -1.0 4,778,095 - +0.3 4,778,095 - -2.1 4,778,095 - -4.2 4,778,095 - +0.2 4,778,175 + +0.3 4,778,175 + -1.2 4,778,175 + +0.2 4,778,176 - -3.0 4,778,176 - -0.9 4,778,176 - -1.8 4,778,176 - -1.8 4,778,197 + -0.3 4,778,197 + +2.5 4,778,198 - +0.3 4,778,198 - -4.2 4,778,198 - +0.5 4,778,204 + +0.5 4,778,205 - -0.3 4,778,230 - -1.3 4,778,416 + +0.1 4,778,706 - Psyr_4011 0.24 -1.5 4,779,373 - Psyr_4011 0.80 -1.0 4,779,582 - -0.7 4,779,599 + -0.2 4,779,599 + -4.1 4,779,599 + +0.5 4,779,600 - -0.3 4,779,600 - -1.6 4,780,045 - Psyr_4012 0.55 -1.8 4,780,160 + Psyr_4012 0.70 -0.6 4,780,248 + Psyr_4012 0.81 -2.0 4,780,249 - Psyr_4012 0.81 -1.2 4,780,249 - Psyr_4012 0.81 +0.3 4,780,256 + Psyr_4012 0.82 -3.8 4,780,276 + Psyr_4012 0.85 -1.1 4,780,277 - Psyr_4012 0.85 -1.1 4,780,277 - Psyr_4012 0.85 -2.1 4,780,277 - Psyr_4012 0.85 -0.1 4,780,277 - Psyr_4012 0.85 -0.7 4,780,277 - Psyr_4012 0.85 +1.5 4,780,386 + -0.8 4,780,387 - +0.7 4,780,387 - +0.5 4,780,387 - -0.4 4,780,387 - -0.4 4,780,394 + -1.5 4,780,395 - -0.7 4,780,460 + -1.3 4,780,460 + -2.8 4,780,460 + +2.9 4,780,460 + -2.2 4,780,460 + -0.1 4,780,460 + -1.9 4,780,460 + -3.1 4,780,460 + -1.7 4,780,460 + -1.6 4,780,460 + -0.9 4,780,460 + -3.7 4,780,460 + -1.6 4,780,461 - -0.4 4,780,461 - -1.4 4,780,461 - -2.5 4,780,461 - -3.1 4,780,461 - -1.1 4,780,461 - -2.3 4,780,461 - +0.2 4,780,461 - -0.5 4,780,461 - -2.4 4,780,461 - +0.3 4,780,461 - -0.5 4,780,520 + Psyr_4013 0.15 -1.0 4,780,520 + Psyr_4013 0.15 -2.3 4,780,520 + Psyr_4013 0.15 -2.3 4,780,521 - Psyr_4013 0.15 -3.4 4,780,541 + Psyr_4013 0.17 +1.3 4,780,542 - Psyr_4013 0.17 -0.1 4,780,542 - Psyr_4013 0.17 -0.3
Or see this region's nucleotide sequence