Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3972 and Psyr_3973 are separated by 27 nucleotides Psyr_3973 and Psyr_3974 overlap by 4 nucleotides Psyr_3974 and Psyr_3975 overlap by 4 nucleotides
Psyr_3972: Psyr_3972 - ABC transporter, periplasmic substrate-binding protein, at 4,719,943 to 4,721,010
_3972
Psyr_3973: Psyr_3973 - Binding-protein-dependent transport systems inner membrane component, at 4,721,038 to 4,721,853
_3973
Psyr_3974: Psyr_3974 - ABC transporter, at 4,721,850 to 4,722,632
_3974
Psyr_3975: Psyr_3975 - conserved hypothetical protein, at 4,722,629 to 4,723,354
_3975
Position (kb) 4721
4722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4720.051 kb on + strand, within Psyr_3972 at 4720.051 kb on + strand, within Psyr_3972 at 4720.051 kb on + strand, within Psyr_3972 at 4720.051 kb on + strand, within Psyr_3972 at 4720.051 kb on + strand, within Psyr_3972 at 4720.052 kb on - strand, within Psyr_3972 at 4720.052 kb on - strand, within Psyr_3972 at 4720.052 kb on - strand, within Psyr_3972 at 4720.052 kb on - strand, within Psyr_3972 at 4720.075 kb on + strand, within Psyr_3972 at 4720.118 kb on - strand, within Psyr_3972 at 4720.153 kb on + strand, within Psyr_3972 at 4720.153 kb on + strand, within Psyr_3972 at 4720.153 kb on + strand, within Psyr_3972 at 4720.154 kb on - strand, within Psyr_3972 at 4720.154 kb on - strand, within Psyr_3972 at 4720.378 kb on + strand, within Psyr_3972 at 4720.378 kb on + strand, within Psyr_3972 at 4720.378 kb on + strand, within Psyr_3972 at 4720.484 kb on + strand, within Psyr_3972 at 4720.484 kb on + strand, within Psyr_3972 at 4720.484 kb on + strand, within Psyr_3972 at 4720.484 kb on + strand, within Psyr_3972 at 4720.484 kb on + strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.485 kb on - strand, within Psyr_3972 at 4720.974 kb on + strand at 4720.974 kb on + strand at 4720.974 kb on + strand at 4720.975 kb on - strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.978 kb on + strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4720.979 kb on - strand at 4721.008 kb on + strand at 4721.008 kb on + strand at 4721.009 kb on - strand at 4721.009 kb on - strand at 4721.022 kb on + strand at 4721.023 kb on - strand at 4721.081 kb on + strand at 4721.120 kb on - strand, within Psyr_3973 at 4721.120 kb on - strand, within Psyr_3973 at 4721.243 kb on - strand, within Psyr_3973 at 4721.729 kb on - strand, within Psyr_3973 at 4721.755 kb on + strand, within Psyr_3973 at 4721.755 kb on + strand, within Psyr_3973 at 4721.755 kb on + strand, within Psyr_3973 at 4721.755 kb on + strand, within Psyr_3973 at 4721.755 kb on + strand, within Psyr_3973 at 4721.756 kb on - strand, within Psyr_3973 at 4721.756 kb on - strand, within Psyr_3973 at 4721.756 kb on - strand, within Psyr_3973 at 4721.887 kb on - strand at 4722.258 kb on + strand, within Psyr_3974 at 4722.499 kb on + strand, within Psyr_3974 at 4722.500 kb on - strand, within Psyr_3974 at 4722.500 kb on - strand, within Psyr_3974 at 4722.546 kb on + strand, within Psyr_3974 at 4722.546 kb on + strand, within Psyr_3974 at 4722.547 kb on - strand, within Psyr_3974 at 4722.547 kb on - strand, within Psyr_3974 at 4722.547 kb on - strand, within Psyr_3974 at 4722.547 kb on - strand, within Psyr_3974 at 4722.705 kb on + strand, within Psyr_3975 at 4722.706 kb on - strand, within Psyr_3975
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,720,051 + Psyr_3972 0.10 -1.2 4,720,051 + Psyr_3972 0.10 -0.3 4,720,051 + Psyr_3972 0.10 -1.1 4,720,051 + Psyr_3972 0.10 +2.6 4,720,051 + Psyr_3972 0.10 -2.8 4,720,052 - Psyr_3972 0.10 +0.5 4,720,052 - Psyr_3972 0.10 +0.9 4,720,052 - Psyr_3972 0.10 -3.4 4,720,052 - Psyr_3972 0.10 +0.5 4,720,075 + Psyr_3972 0.12 -1.7 4,720,118 - Psyr_3972 0.16 +1.3 4,720,153 + Psyr_3972 0.20 -0.9 4,720,153 + Psyr_3972 0.20 +0.7 4,720,153 + Psyr_3972 0.20 +0.5 4,720,154 - Psyr_3972 0.20 -1.1 4,720,154 - Psyr_3972 0.20 -2.0 4,720,378 + Psyr_3972 0.41 +1.8 4,720,378 + Psyr_3972 0.41 +0.4 4,720,378 + Psyr_3972 0.41 -1.1 4,720,484 + Psyr_3972 0.51 +0.0 4,720,484 + Psyr_3972 0.51 +0.5 4,720,484 + Psyr_3972 0.51 -1.0 4,720,484 + Psyr_3972 0.51 +0.1 4,720,484 + Psyr_3972 0.51 +0.9 4,720,485 - Psyr_3972 0.51 +1.2 4,720,485 - Psyr_3972 0.51 -2.3 4,720,485 - Psyr_3972 0.51 -1.0 4,720,485 - Psyr_3972 0.51 +1.6 4,720,485 - Psyr_3972 0.51 +1.1 4,720,485 - Psyr_3972 0.51 -0.3 4,720,485 - Psyr_3972 0.51 +0.5 4,720,485 - Psyr_3972 0.51 +0.3 4,720,974 + +0.8 4,720,974 + +0.8 4,720,974 + +0.3 4,720,975 - +0.4 4,720,978 + -0.1 4,720,978 + -0.3 4,720,978 + +2.0 4,720,978 + -0.3 4,720,978 + -1.4 4,720,978 + -0.9 4,720,978 + +1.0 4,720,978 + -1.4 4,720,978 + +0.2 4,720,978 + -1.1 4,720,979 - -0.8 4,720,979 - +2.1 4,720,979 - +0.0 4,720,979 - -0.0 4,720,979 - +0.6 4,720,979 - +2.6 4,720,979 - -0.5 4,720,979 - -0.5 4,720,979 - +0.0 4,721,008 + +0.8 4,721,008 + -1.3 4,721,009 - -2.2 4,721,009 - +1.2 4,721,022 + +0.0 4,721,023 - +0.3 4,721,081 + -1.8 4,721,120 - Psyr_3973 0.10 +0.3 4,721,120 - Psyr_3973 0.10 +0.0 4,721,243 - Psyr_3973 0.25 +0.9 4,721,729 - Psyr_3973 0.85 -0.8 4,721,755 + Psyr_3973 0.88 +1.7 4,721,755 + Psyr_3973 0.88 -0.0 4,721,755 + Psyr_3973 0.88 +0.6 4,721,755 + Psyr_3973 0.88 +0.9 4,721,755 + Psyr_3973 0.88 +0.2 4,721,756 - Psyr_3973 0.88 +0.6 4,721,756 - Psyr_3973 0.88 -0.1 4,721,756 - Psyr_3973 0.88 +0.9 4,721,887 - -0.4 4,722,258 + Psyr_3974 0.52 +1.5 4,722,499 + Psyr_3974 0.83 +1.0 4,722,500 - Psyr_3974 0.83 -0.4 4,722,500 - Psyr_3974 0.83 +0.6 4,722,546 + Psyr_3974 0.89 +0.1 4,722,546 + Psyr_3974 0.89 +0.9 4,722,547 - Psyr_3974 0.89 -2.1 4,722,547 - Psyr_3974 0.89 +1.9 4,722,547 - Psyr_3974 0.89 +0.2 4,722,547 - Psyr_3974 0.89 +0.3 4,722,705 + Psyr_3975 0.10 +0.9 4,722,706 - Psyr_3975 0.11 -0.0
Or see this region's nucleotide sequence