Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3942 and Psyr_3943 overlap by 4 nucleotides Psyr_3943 and Psyr_3944 are separated by 178 nucleotides Psyr_3944 and Psyr_3945 are separated by 201 nucleotides Psyr_3945 and Psyr_3946 are separated by 100 nucleotides
Psyr_3942: Psyr_3942 - diguanylate cyclase/phosphodiesterase, at 4,688,223 to 4,690,577
_3942
Psyr_3943: Psyr_3943 - conserved hypothetical protein, at 4,690,574 to 4,691,248
_3943
Psyr_3944: Psyr_3944 - ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16, at 4,691,427 to 4,693,844
_3944
Psyr_3945: Psyr_3945 - secreted protein-like protein, at 4,694,046 to 4,694,438
_3945
Psyr_3946: Psyr_3946 - Proteobacterial methyltransferase, at 4,694,539 to 4,695,282
_3946
Position (kb) 4691
4692
4693
4694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4690.499 kb on - strand at 4690.499 kb on - strand at 4690.568 kb on + strand at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.845 kb on + strand, within Psyr_3943 at 4690.846 kb on - strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.037 kb on - strand, within Psyr_3943 at 4691.089 kb on + strand, within Psyr_3943 at 4691.089 kb on + strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.159 kb on + strand, within Psyr_3943 at 4691.159 kb on + strand, within Psyr_3943 at 4691.160 kb on - strand, within Psyr_3943 at 4691.223 kb on - strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.234 kb on - strand at 4691.234 kb on - strand at 4691.234 kb on - strand at 4691.237 kb on + strand at 4691.237 kb on + strand at 4691.238 kb on - strand at 4691.238 kb on - strand at 4691.279 kb on - strand at 4691.279 kb on - strand at 4691.287 kb on + strand at 4691.287 kb on + strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.323 kb on + strand at 4691.323 kb on + strand at 4691.324 kb on - strand at 4691.368 kb on - strand at 4691.368 kb on - strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.548 kb on - strand at 4691.548 kb on - strand at 4691.548 kb on - strand at 4691.782 kb on + strand, within Psyr_3944 at 4691.858 kb on - strand, within Psyr_3944 at 4691.965 kb on - strand, within Psyr_3944 at 4691.965 kb on - strand, within Psyr_3944 at 4691.985 kb on + strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4692.067 kb on + strand, within Psyr_3944 at 4692.067 kb on + strand, within Psyr_3944 at 4692.076 kb on + strand, within Psyr_3944 at 4692.076 kb on + strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944 at 4692.393 kb on + strand, within Psyr_3944 at 4692.411 kb on + strand, within Psyr_3944 at 4692.412 kb on - strand, within Psyr_3944 at 4692.412 kb on - strand, within Psyr_3944 at 4692.412 kb on - strand, within Psyr_3944 at 4692.558 kb on + strand, within Psyr_3944 at 4692.558 kb on + strand, within Psyr_3944 at 4692.558 kb on + strand, within Psyr_3944 at 4692.558 kb on + strand, within Psyr_3944 at 4692.559 kb on - strand, within Psyr_3944 at 4692.559 kb on - strand, within Psyr_3944 at 4692.559 kb on - strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.723 kb on + strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.724 kb on - strand, within Psyr_3944 at 4692.825 kb on + strand, within Psyr_3944 at 4692.825 kb on + strand, within Psyr_3944 at 4692.825 kb on + strand, within Psyr_3944 at 4692.825 kb on + strand, within Psyr_3944 at 4692.826 kb on - strand, within Psyr_3944 at 4692.826 kb on - strand, within Psyr_3944 at 4692.898 kb on - strand, within Psyr_3944 at 4692.898 kb on - strand, within Psyr_3944 at 4693.011 kb on + strand, within Psyr_3944 at 4693.012 kb on - strand, within Psyr_3944 at 4693.012 kb on - strand, within Psyr_3944 at 4693.013 kb on + strand, within Psyr_3944 at 4693.013 kb on + strand, within Psyr_3944 at 4693.014 kb on - strand, within Psyr_3944 at 4693.382 kb on + strand, within Psyr_3944 at 4693.382 kb on + strand, within Psyr_3944 at 4693.382 kb on + strand, within Psyr_3944 at 4693.453 kb on - strand, within Psyr_3944 at 4693.458 kb on + strand, within Psyr_3944 at 4693.458 kb on + strand, within Psyr_3944 at 4693.458 kb on + strand, within Psyr_3944 at 4693.458 kb on + strand, within Psyr_3944 at 4693.458 kb on + strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.459 kb on - strand, within Psyr_3944 at 4693.525 kb on + strand, within Psyr_3944 at 4693.525 kb on + strand, within Psyr_3944 at 4693.525 kb on + strand, within Psyr_3944 at 4693.525 kb on + strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.526 kb on - strand, within Psyr_3944 at 4693.666 kb on + strand at 4693.666 kb on + strand at 4693.666 kb on + strand at 4693.666 kb on + strand at 4693.666 kb on + strand at 4693.666 kb on + strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.667 kb on - strand at 4693.776 kb on + strand at 4693.776 kb on + strand at 4693.777 kb on - strand at 4693.777 kb on - strand at 4693.843 kb on - strand at 4693.853 kb on - strand at 4693.853 kb on - strand at 4693.893 kb on + strand at 4694.025 kb on - strand at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.271 kb on + strand, within Psyr_3945 at 4694.272 kb on - strand, within Psyr_3945 at 4694.272 kb on - strand, within Psyr_3945 at 4694.272 kb on - strand, within Psyr_3945 at 4694.272 kb on - strand, within Psyr_3945 at 4694.272 kb on - strand, within Psyr_3945 at 4694.370 kb on + strand, within Psyr_3945 at 4694.370 kb on + strand, within Psyr_3945 at 4694.470 kb on - strand at 4694.723 kb on - strand, within Psyr_3946 at 4694.842 kb on + strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946 at 4694.843 kb on - strand, within Psyr_3946
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,690,499 - -0.5 4,690,499 - +1.3 4,690,568 + +0.5 4,690,839 + Psyr_3943 0.39 -0.5 4,690,839 + Psyr_3943 0.39 -0.1 4,690,839 + Psyr_3943 0.39 +0.6 4,690,839 + Psyr_3943 0.39 +3.2 4,690,839 + Psyr_3943 0.39 +0.5 4,690,839 + Psyr_3943 0.39 +1.8 4,690,839 + Psyr_3943 0.39 +1.5 4,690,840 - Psyr_3943 0.39 -1.2 4,690,840 - Psyr_3943 0.39 +0.3 4,690,840 - Psyr_3943 0.39 +0.3 4,690,840 - Psyr_3943 0.39 -0.2 4,690,840 - Psyr_3943 0.39 +2.0 4,690,840 - Psyr_3943 0.39 +1.1 4,690,840 - Psyr_3943 0.39 +0.1 4,690,840 - Psyr_3943 0.39 +0.8 4,690,840 - Psyr_3943 0.39 +1.6 4,690,840 - Psyr_3943 0.39 -1.1 4,690,840 - Psyr_3943 0.39 -0.2 4,690,845 + Psyr_3943 0.40 -0.3 4,690,846 - Psyr_3943 0.40 +0.1 4,691,036 + Psyr_3943 0.68 -0.5 4,691,036 + Psyr_3943 0.68 -0.1 4,691,036 + Psyr_3943 0.68 +0.2 4,691,036 + Psyr_3943 0.68 -0.4 4,691,036 + Psyr_3943 0.68 +0.2 4,691,037 - Psyr_3943 0.69 +1.4 4,691,089 + Psyr_3943 0.76 +0.2 4,691,089 + Psyr_3943 0.76 +0.1 4,691,090 - Psyr_3943 0.76 -1.5 4,691,090 - Psyr_3943 0.76 +0.6 4,691,090 - Psyr_3943 0.76 +0.9 4,691,090 - Psyr_3943 0.76 +1.8 4,691,090 - Psyr_3943 0.76 -1.6 4,691,090 - Psyr_3943 0.76 +1.1 4,691,159 + Psyr_3943 0.87 -0.0 4,691,159 + Psyr_3943 0.87 -1.1 4,691,160 - Psyr_3943 0.87 -0.4 4,691,223 - -0.5 4,691,233 + -0.4 4,691,233 + -3.1 4,691,233 + -2.1 4,691,233 + -0.6 4,691,233 + -2.5 4,691,234 - -0.5 4,691,234 - -0.1 4,691,234 - +0.5 4,691,237 + -0.3 4,691,237 + -1.1 4,691,238 - +0.3 4,691,238 - -0.8 4,691,279 - +0.3 4,691,279 - +0.6 4,691,287 + -0.3 4,691,287 + -1.2 4,691,288 - -0.2 4,691,288 - -0.8 4,691,288 - -0.7 4,691,288 - +1.4 4,691,288 - +0.6 4,691,323 + -0.5 4,691,323 + -1.4 4,691,324 - +0.1 4,691,368 - +0.5 4,691,368 - +0.2 4,691,396 + -0.1 4,691,396 + +2.1 4,691,396 + -0.4 4,691,396 + -1.3 4,691,397 - +0.8 4,691,397 - +0.6 4,691,397 - +0.5 4,691,397 - -0.2 4,691,397 - -0.9 4,691,548 - -1.8 4,691,548 - +0.7 4,691,548 - +0.6 4,691,782 + Psyr_3944 0.15 -0.1 4,691,858 - Psyr_3944 0.18 +1.1 4,691,965 - Psyr_3944 0.22 -0.2 4,691,965 - Psyr_3944 0.22 +0.4 4,691,985 + Psyr_3944 0.23 -1.3 4,691,986 - Psyr_3944 0.23 -1.0 4,691,986 - Psyr_3944 0.23 -0.1 4,691,986 - Psyr_3944 0.23 +0.6 4,692,067 + Psyr_3944 0.26 -3.6 4,692,067 + Psyr_3944 0.26 -0.5 4,692,076 + Psyr_3944 0.27 -0.8 4,692,076 + Psyr_3944 0.27 -0.3 4,692,077 - Psyr_3944 0.27 +2.3 4,692,077 - Psyr_3944 0.27 -0.2 4,692,077 - Psyr_3944 0.27 -0.5 4,692,393 + Psyr_3944 0.40 -3.7 4,692,411 + Psyr_3944 0.41 -2.1 4,692,412 - Psyr_3944 0.41 -2.1 4,692,412 - Psyr_3944 0.41 -0.4 4,692,412 - Psyr_3944 0.41 -0.1 4,692,558 + Psyr_3944 0.47 +1.1 4,692,558 + Psyr_3944 0.47 +0.9 4,692,558 + Psyr_3944 0.47 -1.8 4,692,558 + Psyr_3944 0.47 -1.8 4,692,559 - Psyr_3944 0.47 -0.8 4,692,559 - Psyr_3944 0.47 -0.4 4,692,559 - Psyr_3944 0.47 -0.0 4,692,723 + Psyr_3944 0.54 -0.2 4,692,723 + Psyr_3944 0.54 -0.7 4,692,723 + Psyr_3944 0.54 +2.6 4,692,723 + Psyr_3944 0.54 +1.2 4,692,723 + Psyr_3944 0.54 +0.7 4,692,723 + Psyr_3944 0.54 -0.9 4,692,723 + Psyr_3944 0.54 +0.5 4,692,723 + Psyr_3944 0.54 +1.0 4,692,723 + Psyr_3944 0.54 -0.9 4,692,723 + Psyr_3944 0.54 -0.5 4,692,723 + Psyr_3944 0.54 -0.5 4,692,723 + Psyr_3944 0.54 -0.9 4,692,723 + Psyr_3944 0.54 -0.1 4,692,723 + Psyr_3944 0.54 -0.5 4,692,724 - Psyr_3944 0.54 -1.3 4,692,724 - Psyr_3944 0.54 -1.8 4,692,724 - Psyr_3944 0.54 +4.4 4,692,724 - Psyr_3944 0.54 +0.7 4,692,724 - Psyr_3944 0.54 +0.5 4,692,724 - Psyr_3944 0.54 +0.4 4,692,724 - Psyr_3944 0.54 -1.7 4,692,724 - Psyr_3944 0.54 +2.1 4,692,724 - Psyr_3944 0.54 +0.3 4,692,724 - Psyr_3944 0.54 -1.2 4,692,724 - Psyr_3944 0.54 -0.8 4,692,724 - Psyr_3944 0.54 -0.4 4,692,724 - Psyr_3944 0.54 +2.5 4,692,724 - Psyr_3944 0.54 +0.5 4,692,724 - Psyr_3944 0.54 -0.7 4,692,724 - Psyr_3944 0.54 -1.7 4,692,724 - Psyr_3944 0.54 -0.7 4,692,724 - Psyr_3944 0.54 -2.5 4,692,724 - Psyr_3944 0.54 +0.5 4,692,724 - Psyr_3944 0.54 -0.3 4,692,724 - Psyr_3944 0.54 -0.4 4,692,724 - Psyr_3944 0.54 -0.2 4,692,724 - Psyr_3944 0.54 -0.6 4,692,825 + Psyr_3944 0.58 +0.5 4,692,825 + Psyr_3944 0.58 +0.3 4,692,825 + Psyr_3944 0.58 -1.5 4,692,825 + Psyr_3944 0.58 -0.7 4,692,826 - Psyr_3944 0.58 -2.6 4,692,826 - Psyr_3944 0.58 -1.5 4,692,898 - Psyr_3944 0.61 -0.9 4,692,898 - Psyr_3944 0.61 -2.0 4,693,011 + Psyr_3944 0.66 +0.7 4,693,012 - Psyr_3944 0.66 -0.7 4,693,012 - Psyr_3944 0.66 -1.1 4,693,013 + Psyr_3944 0.66 -0.0 4,693,013 + Psyr_3944 0.66 -0.1 4,693,014 - Psyr_3944 0.66 +1.8 4,693,382 + Psyr_3944 0.81 +2.3 4,693,382 + Psyr_3944 0.81 -2.1 4,693,382 + Psyr_3944 0.81 -1.3 4,693,453 - Psyr_3944 0.84 -0.6 4,693,458 + Psyr_3944 0.84 +0.3 4,693,458 + Psyr_3944 0.84 +0.7 4,693,458 + Psyr_3944 0.84 -0.0 4,693,458 + Psyr_3944 0.84 +0.7 4,693,458 + Psyr_3944 0.84 +0.3 4,693,459 - Psyr_3944 0.84 -2.0 4,693,459 - Psyr_3944 0.84 -0.0 4,693,459 - Psyr_3944 0.84 +0.6 4,693,459 - Psyr_3944 0.84 -1.2 4,693,459 - Psyr_3944 0.84 -1.0 4,693,459 - Psyr_3944 0.84 -1.9 4,693,459 - Psyr_3944 0.84 -0.2 4,693,525 + Psyr_3944 0.87 +1.6 4,693,525 + Psyr_3944 0.87 -0.2 4,693,525 + Psyr_3944 0.87 -0.8 4,693,525 + Psyr_3944 0.87 -0.3 4,693,526 - Psyr_3944 0.87 -1.5 4,693,526 - Psyr_3944 0.87 -2.5 4,693,526 - Psyr_3944 0.87 +1.3 4,693,526 - Psyr_3944 0.87 -2.3 4,693,526 - Psyr_3944 0.87 +0.2 4,693,526 - Psyr_3944 0.87 -0.6 4,693,526 - Psyr_3944 0.87 -1.6 4,693,666 + +1.5 4,693,666 + +0.3 4,693,666 + +1.5 4,693,666 + +1.1 4,693,666 + -2.7 4,693,666 + -0.4 4,693,667 - -2.3 4,693,667 - -0.5 4,693,667 - -2.0 4,693,667 - +0.5 4,693,667 - -1.2 4,693,667 - -0.7 4,693,667 - +2.1 4,693,667 - -1.4 4,693,667 - +0.8 4,693,667 - -0.1 4,693,776 + +0.2 4,693,776 + +2.8 4,693,777 - -1.0 4,693,777 - +1.5 4,693,843 - +0.0 4,693,853 - -0.7 4,693,853 - -1.0 4,693,893 + +1.6 4,694,025 - -0.5 4,694,271 + Psyr_3945 0.57 +0.1 4,694,271 + Psyr_3945 0.57 +0.1 4,694,271 + Psyr_3945 0.57 -1.5 4,694,271 + Psyr_3945 0.57 +0.6 4,694,271 + Psyr_3945 0.57 -0.3 4,694,271 + Psyr_3945 0.57 -0.0 4,694,271 + Psyr_3945 0.57 -0.2 4,694,272 - Psyr_3945 0.58 -1.2 4,694,272 - Psyr_3945 0.58 -0.3 4,694,272 - Psyr_3945 0.58 -0.3 4,694,272 - Psyr_3945 0.58 -0.0 4,694,272 - Psyr_3945 0.58 -0.1 4,694,370 + Psyr_3945 0.82 +0.1 4,694,370 + Psyr_3945 0.82 +0.2 4,694,470 - +0.2 4,694,723 - Psyr_3946 0.25 +0.3 4,694,842 + Psyr_3946 0.41 +0.6 4,694,843 - Psyr_3946 0.41 +0.5 4,694,843 - Psyr_3946 0.41 -0.0 4,694,843 - Psyr_3946 0.41 -0.7
Or see this region's nucleotide sequence