Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3942 and Psyr_3943 overlap by 4 nucleotides Psyr_3943 and Psyr_3944 are separated by 178 nucleotides
Psyr_3942: Psyr_3942 - diguanylate cyclase/phosphodiesterase, at 4,688,223 to 4,690,577
_3942
Psyr_3943: Psyr_3943 - conserved hypothetical protein, at 4,690,574 to 4,691,248
_3943
Psyr_3944: Psyr_3944 - ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16, at 4,691,427 to 4,693,844
_3944
Position (kb) 4690
4691
4692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4689.617 kb on + strand, within Psyr_3942 at 4689.617 kb on + strand, within Psyr_3942 at 4689.618 kb on - strand, within Psyr_3942 at 4689.618 kb on - strand, within Psyr_3942 at 4689.618 kb on - strand, within Psyr_3942 at 4689.635 kb on + strand, within Psyr_3942 at 4689.636 kb on - strand, within Psyr_3942 at 4689.772 kb on + strand, within Psyr_3942 at 4689.866 kb on + strand, within Psyr_3942 at 4689.867 kb on - strand, within Psyr_3942 at 4689.978 kb on - strand, within Psyr_3942 at 4689.987 kb on + strand, within Psyr_3942 at 4689.987 kb on + strand, within Psyr_3942 at 4689.988 kb on - strand, within Psyr_3942 at 4689.988 kb on - strand, within Psyr_3942 at 4690.056 kb on - strand, within Psyr_3942 at 4690.189 kb on + strand, within Psyr_3942 at 4690.189 kb on + strand, within Psyr_3942 at 4690.499 kb on - strand at 4690.499 kb on - strand at 4690.568 kb on + strand at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.839 kb on + strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.840 kb on - strand, within Psyr_3943 at 4690.845 kb on + strand, within Psyr_3943 at 4690.846 kb on - strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.036 kb on + strand, within Psyr_3943 at 4691.037 kb on - strand, within Psyr_3943 at 4691.089 kb on + strand, within Psyr_3943 at 4691.089 kb on + strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.090 kb on - strand, within Psyr_3943 at 4691.159 kb on + strand, within Psyr_3943 at 4691.159 kb on + strand, within Psyr_3943 at 4691.160 kb on - strand, within Psyr_3943 at 4691.223 kb on - strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.233 kb on + strand at 4691.234 kb on - strand at 4691.234 kb on - strand at 4691.234 kb on - strand at 4691.237 kb on + strand at 4691.237 kb on + strand at 4691.238 kb on - strand at 4691.238 kb on - strand at 4691.279 kb on - strand at 4691.279 kb on - strand at 4691.287 kb on + strand at 4691.287 kb on + strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.288 kb on - strand at 4691.323 kb on + strand at 4691.323 kb on + strand at 4691.324 kb on - strand at 4691.368 kb on - strand at 4691.368 kb on - strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.396 kb on + strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.397 kb on - strand at 4691.548 kb on - strand at 4691.548 kb on - strand at 4691.548 kb on - strand at 4691.782 kb on + strand, within Psyr_3944 at 4691.858 kb on - strand, within Psyr_3944 at 4691.965 kb on - strand, within Psyr_3944 at 4691.965 kb on - strand, within Psyr_3944 at 4691.985 kb on + strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4691.986 kb on - strand, within Psyr_3944 at 4692.067 kb on + strand, within Psyr_3944 at 4692.067 kb on + strand, within Psyr_3944 at 4692.076 kb on + strand, within Psyr_3944 at 4692.076 kb on + strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944 at 4692.077 kb on - strand, within Psyr_3944
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,689,617 + Psyr_3942 0.59 +1.5 4,689,617 + Psyr_3942 0.59 -1.3 4,689,618 - Psyr_3942 0.59 +1.3 4,689,618 - Psyr_3942 0.59 +0.7 4,689,618 - Psyr_3942 0.59 -1.3 4,689,635 + Psyr_3942 0.60 +1.1 4,689,636 - Psyr_3942 0.60 +0.1 4,689,772 + Psyr_3942 0.66 -1.1 4,689,866 + Psyr_3942 0.70 +0.1 4,689,867 - Psyr_3942 0.70 -0.5 4,689,978 - Psyr_3942 0.75 +0.6 4,689,987 + Psyr_3942 0.75 -0.2 4,689,987 + Psyr_3942 0.75 +0.2 4,689,988 - Psyr_3942 0.75 +1.5 4,689,988 - Psyr_3942 0.75 -0.9 4,690,056 - Psyr_3942 0.78 -1.8 4,690,189 + Psyr_3942 0.83 +0.5 4,690,189 + Psyr_3942 0.83 -0.4 4,690,499 - -0.5 4,690,499 - +1.3 4,690,568 + +0.5 4,690,839 + Psyr_3943 0.39 -0.5 4,690,839 + Psyr_3943 0.39 -0.1 4,690,839 + Psyr_3943 0.39 +0.6 4,690,839 + Psyr_3943 0.39 +3.2 4,690,839 + Psyr_3943 0.39 +0.5 4,690,839 + Psyr_3943 0.39 +1.8 4,690,839 + Psyr_3943 0.39 +1.5 4,690,840 - Psyr_3943 0.39 -1.2 4,690,840 - Psyr_3943 0.39 +0.3 4,690,840 - Psyr_3943 0.39 +0.3 4,690,840 - Psyr_3943 0.39 -0.2 4,690,840 - Psyr_3943 0.39 +2.0 4,690,840 - Psyr_3943 0.39 +1.1 4,690,840 - Psyr_3943 0.39 +0.1 4,690,840 - Psyr_3943 0.39 +0.8 4,690,840 - Psyr_3943 0.39 +1.6 4,690,840 - Psyr_3943 0.39 -1.1 4,690,840 - Psyr_3943 0.39 -0.2 4,690,845 + Psyr_3943 0.40 -0.3 4,690,846 - Psyr_3943 0.40 +0.1 4,691,036 + Psyr_3943 0.68 -0.5 4,691,036 + Psyr_3943 0.68 -0.1 4,691,036 + Psyr_3943 0.68 +0.2 4,691,036 + Psyr_3943 0.68 -0.4 4,691,036 + Psyr_3943 0.68 +0.2 4,691,037 - Psyr_3943 0.69 +1.4 4,691,089 + Psyr_3943 0.76 +0.2 4,691,089 + Psyr_3943 0.76 +0.1 4,691,090 - Psyr_3943 0.76 -1.5 4,691,090 - Psyr_3943 0.76 +0.6 4,691,090 - Psyr_3943 0.76 +0.9 4,691,090 - Psyr_3943 0.76 +1.8 4,691,090 - Psyr_3943 0.76 -1.6 4,691,090 - Psyr_3943 0.76 +1.1 4,691,159 + Psyr_3943 0.87 -0.0 4,691,159 + Psyr_3943 0.87 -1.1 4,691,160 - Psyr_3943 0.87 -0.4 4,691,223 - -0.5 4,691,233 + -0.4 4,691,233 + -3.1 4,691,233 + -2.1 4,691,233 + -0.6 4,691,233 + -2.5 4,691,234 - -0.5 4,691,234 - -0.1 4,691,234 - +0.5 4,691,237 + -0.3 4,691,237 + -1.1 4,691,238 - +0.3 4,691,238 - -0.8 4,691,279 - +0.3 4,691,279 - +0.6 4,691,287 + -0.3 4,691,287 + -1.2 4,691,288 - -0.2 4,691,288 - -0.8 4,691,288 - -0.7 4,691,288 - +1.4 4,691,288 - +0.6 4,691,323 + -0.5 4,691,323 + -1.4 4,691,324 - +0.1 4,691,368 - +0.5 4,691,368 - +0.2 4,691,396 + -0.1 4,691,396 + +2.1 4,691,396 + -0.4 4,691,396 + -1.3 4,691,397 - +0.8 4,691,397 - +0.6 4,691,397 - +0.5 4,691,397 - -0.2 4,691,397 - -0.9 4,691,548 - -1.8 4,691,548 - +0.7 4,691,548 - +0.6 4,691,782 + Psyr_3944 0.15 -0.1 4,691,858 - Psyr_3944 0.18 +1.1 4,691,965 - Psyr_3944 0.22 -0.2 4,691,965 - Psyr_3944 0.22 +0.4 4,691,985 + Psyr_3944 0.23 -1.3 4,691,986 - Psyr_3944 0.23 -1.0 4,691,986 - Psyr_3944 0.23 -0.1 4,691,986 - Psyr_3944 0.23 +0.6 4,692,067 + Psyr_3944 0.26 -3.6 4,692,067 + Psyr_3944 0.26 -0.5 4,692,076 + Psyr_3944 0.27 -0.8 4,692,076 + Psyr_3944 0.27 -0.3 4,692,077 - Psyr_3944 0.27 +2.3 4,692,077 - Psyr_3944 0.27 -0.2 4,692,077 - Psyr_3944 0.27 -0.5
Or see this region's nucleotide sequence