Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3854 and Psyr_3855 are separated by 153 nucleotides Psyr_3855 and Psyr_3856 are separated by 108 nucleotides
Psyr_3854: Psyr_3854 - OmpA/MotB, at 4,592,926 to 4,594,086
_3854
Psyr_3855: Psyr_3855 - Beta-lactamase, at 4,594,240 to 4,595,388
_3855
Psyr_3856: Psyr_3856 - Helicase c2, at 4,595,497 to 4,597,641
_3856
Position (kb) 4594
4595
4596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4593.636 kb on - strand, within Psyr_3854 at 4594.075 kb on - strand at 4594.075 kb on - strand at 4594.075 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.129 kb on - strand at 4594.137 kb on - strand at 4594.137 kb on - strand at 4594.139 kb on - strand at 4594.139 kb on - strand at 4594.139 kb on - strand at 4594.148 kb on - strand at 4594.199 kb on + strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.241 kb on + strand at 4594.241 kb on + strand at 4594.241 kb on + strand at 4594.242 kb on - strand at 4594.242 kb on - strand at 4594.301 kb on + strand at 4594.301 kb on + strand at 4594.302 kb on - strand at 4594.302 kb on - strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.364 kb on - strand, within Psyr_3855 at 4594.413 kb on - strand, within Psyr_3855 at 4594.565 kb on + strand, within Psyr_3855 at 4594.565 kb on + strand, within Psyr_3855 at 4594.566 kb on - strand, within Psyr_3855 at 4594.566 kb on - strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4595.070 kb on + strand, within Psyr_3855 at 4595.206 kb on - strand, within Psyr_3855 at 4595.206 kb on - strand, within Psyr_3855 at 4595.206 kb on - strand, within Psyr_3855 at 4595.347 kb on + strand at 4595.347 kb on + strand at 4595.347 kb on + strand at 4595.347 kb on + strand at 4595.348 kb on - strand at 4595.348 kb on - strand at 4595.370 kb on - strand at 4595.503 kb on + strand at 4595.503 kb on + strand at 4595.503 kb on + strand at 4595.503 kb on + strand at 4595.504 kb on - strand at 4595.824 kb on + strand, within Psyr_3856 at 4595.825 kb on - strand, within Psyr_3856 at 4595.825 kb on - strand, within Psyr_3856 at 4595.825 kb on - strand, within Psyr_3856 at 4595.967 kb on - strand, within Psyr_3856 at 4595.967 kb on - strand, within Psyr_3856 at 4595.967 kb on - strand, within Psyr_3856
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,593,636 - Psyr_3854 0.61 -0.2 4,594,075 - +1.2 4,594,075 - +0.1 4,594,075 - +0.0 4,594,125 - +0.5 4,594,125 - +0.7 4,594,125 - -0.0 4,594,125 - -0.4 4,594,129 - -1.5 4,594,137 - +0.1 4,594,137 - -0.5 4,594,139 - +0.2 4,594,139 - -1.1 4,594,139 - -1.5 4,594,148 - -0.2 4,594,199 + -1.6 4,594,229 - -1.1 4,594,229 - -1.1 4,594,229 - -2.3 4,594,229 - +1.6 4,594,241 + -0.8 4,594,241 + -2.1 4,594,241 + +0.8 4,594,242 - -1.3 4,594,242 - -2.1 4,594,301 + +0.2 4,594,301 + -0.1 4,594,302 - +0.6 4,594,302 - -0.2 4,594,314 + -0.4 4,594,314 + +0.7 4,594,314 + +1.1 4,594,314 + -0.2 4,594,315 - +0.5 4,594,315 - -0.9 4,594,315 - -0.5 4,594,315 - -0.4 4,594,315 - -0.3 4,594,364 - Psyr_3855 0.11 -0.3 4,594,413 - Psyr_3855 0.15 -0.1 4,594,565 + Psyr_3855 0.28 +1.3 4,594,565 + Psyr_3855 0.28 -1.2 4,594,566 - Psyr_3855 0.28 +0.4 4,594,566 - Psyr_3855 0.28 +1.1 4,594,907 + Psyr_3855 0.58 -0.8 4,594,907 + Psyr_3855 0.58 +0.6 4,594,907 + Psyr_3855 0.58 +1.4 4,594,907 + Psyr_3855 0.58 +0.1 4,594,908 - Psyr_3855 0.58 +1.2 4,594,908 - Psyr_3855 0.58 +0.6 4,594,908 - Psyr_3855 0.58 +0.6 4,595,070 + Psyr_3855 0.72 +0.4 4,595,206 - Psyr_3855 0.84 +1.1 4,595,206 - Psyr_3855 0.84 -0.6 4,595,206 - Psyr_3855 0.84 +0.0 4,595,347 + +1.9 4,595,347 + +2.0 4,595,347 + -0.5 4,595,347 + -0.0 4,595,348 - +1.3 4,595,348 - +0.7 4,595,370 - +0.7 4,595,503 + +2.0 4,595,503 + -1.2 4,595,503 + +0.6 4,595,503 + +0.2 4,595,504 - -3.4 4,595,824 + Psyr_3856 0.15 -1.4 4,595,825 - Psyr_3856 0.15 +0.5 4,595,825 - Psyr_3856 0.15 +0.1 4,595,825 - Psyr_3856 0.15 +1.5 4,595,967 - Psyr_3856 0.22 -0.0 4,595,967 - Psyr_3856 0.22 +2.1 4,595,967 - Psyr_3856 0.22 -1.0
Or see this region's nucleotide sequence