Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3851 and Psyr_3852 are separated by 219 nucleotides Psyr_3852 and Psyr_3853 are separated by 147 nucleotides Psyr_3853 and Psyr_3854 are separated by 74 nucleotides
Psyr_3851: Psyr_3851 - conserved hypothetical protein, at 4,589,759 to 4,591,372
_3851
Psyr_3852: Psyr_3852 - lipoprotein SlyB, putative, at 4,591,592 to 4,592,056
_3852
Psyr_3853: Psyr_3853 - Pyridoxamine 5'-phosphate oxidase, at 4,592,204 to 4,592,851
_3853
Psyr_3854: Psyr_3854 - OmpA/MotB, at 4,592,926 to 4,594,086
_3854
Position (kb) 4591
4592
4593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.677 kb on + strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.710 kb on + strand, within Psyr_3851 at 4590.710 kb on + strand, within Psyr_3851 at 4590.878 kb on - strand, within Psyr_3851 at 4590.974 kb on + strand, within Psyr_3851 at 4591.052 kb on + strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.235 kb on - strand at 4591.385 kb on + strand at 4591.413 kb on + strand at 4591.413 kb on + strand at 4591.414 kb on - strand at 4591.414 kb on - strand at 4591.414 kb on - strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.440 kb on - strand at 4591.440 kb on - strand at 4591.509 kb on + strand at 4591.509 kb on + strand at 4591.510 kb on - strand at 4591.683 kb on + strand, within Psyr_3852 at 4591.683 kb on + strand, within Psyr_3852 at 4591.684 kb on - strand, within Psyr_3852 at 4591.684 kb on - strand, within Psyr_3852 at 4591.968 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.994 kb on - strand, within Psyr_3852 at 4591.994 kb on - strand, within Psyr_3852 at 4592.056 kb on + strand at 4592.056 kb on + strand at 4592.088 kb on + strand at 4592.089 kb on - strand at 4592.089 kb on - strand at 4592.133 kb on + strand at 4592.134 kb on - strand at 4592.152 kb on + strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.168 kb on - strand at 4592.196 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 4,590,677 + Psyr_3851 0.57 -0.8 4,590,677 + Psyr_3851 0.57 +0.5 4,590,677 + Psyr_3851 0.57 -2.5 4,590,677 + Psyr_3851 0.57 -0.3 4,590,677 + Psyr_3851 0.57 +1.0 4,590,677 + Psyr_3851 0.57 +0.3 4,590,677 + Psyr_3851 0.57 -0.2 4,590,677 + Psyr_3851 0.57 +1.7 4,590,678 - Psyr_3851 0.57 -1.7 4,590,678 - Psyr_3851 0.57 +1.8 4,590,710 + Psyr_3851 0.59 -0.8 4,590,710 + Psyr_3851 0.59 +0.3 4,590,878 - Psyr_3851 0.69 -0.4 4,590,974 + Psyr_3851 0.75 -1.1 4,591,052 + Psyr_3851 0.80 +0.6 4,591,053 - Psyr_3851 0.80 -1.5 4,591,053 - Psyr_3851 0.80 -0.8 4,591,053 - Psyr_3851 0.80 +0.0 4,591,235 - +0.9 4,591,385 + +1.3 4,591,413 + +0.6 4,591,413 + -0.4 4,591,414 - +1.4 4,591,414 - +0.6 4,591,414 - +1.2 4,591,439 + +2.8 4,591,439 + -0.0 4,591,439 + +1.0 4,591,439 + +1.2 4,591,439 + -1.2 4,591,440 - +0.1 4,591,440 - +0.2 4,591,509 + +0.1 4,591,509 + -0.9 4,591,510 - +2.5 4,591,683 + Psyr_3852 0.20 -1.2 4,591,683 + Psyr_3852 0.20 -0.8 4,591,684 - Psyr_3852 0.20 -1.5 4,591,684 - Psyr_3852 0.20 -2.0 4,591,968 + Psyr_3852 0.81 -1.2 4,591,993 + Psyr_3852 0.86 +0.9 4,591,993 + Psyr_3852 0.86 -2.3 4,591,993 + Psyr_3852 0.86 -0.7 4,591,994 - Psyr_3852 0.86 -2.5 4,591,994 - Psyr_3852 0.86 -0.5 4,592,056 + -0.0 4,592,056 + +0.3 4,592,088 + +0.7 4,592,089 - +0.7 4,592,089 - -0.8 4,592,133 + -0.7 4,592,134 - -0.7 4,592,152 + +0.9 4,592,153 - -0.4 4,592,153 - +0.9 4,592,153 - -0.1 4,592,153 - -0.3 4,592,153 - +0.9 4,592,167 + +0.5 4,592,167 + -0.4 4,592,167 + -1.1 4,592,167 + -0.5 4,592,168 - +1.1 4,592,196 + -0.2 4,592,927 + -1.3 4,592,927 + -0.2 4,592,927 + -0.2 4,592,927 + -3.7 4,592,927 + +0.9 4,592,927 + -1.3 4,592,927 + -3.6 4,592,928 - +0.2 4,592,928 - +0.2 4,592,928 - -0.6 4,592,928 - -1.4 4,592,928 - -0.9 4,592,928 - +0.3 4,592,931 + -1.1
Or see this region's nucleotide sequence