Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3822

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3820 and Psyr_3821 are separated by 78 nucleotidesPsyr_3821 and Psyr_3822 are separated by 1 nucleotidesPsyr_3822 and Psyr_3823 are separated by 267 nucleotides Psyr_3820: Psyr_3820 - conserved domain protein, at 4,545,277 to 4,545,822 _3820 Psyr_3821: Psyr_3821 - Short-chain dehydrogenase/reductase SDR, at 4,545,901 to 4,546,635 _3821 Psyr_3822: Psyr_3822 - Protein of unknown function DUF6, at 4,546,637 to 4,547,515 _3822 Psyr_3823: Psyr_3823 - Hemolysin-type calcium-binding region:Putative Ig, at 4,547,783 to 4,552,615 _3823 Position (kb) 4546 4547 4548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4546.210 kb on + strand, within Psyr_3821at 4546.210 kb on + strand, within Psyr_3821at 4546.211 kb on - strand, within Psyr_3821at 4546.363 kb on + strand, within Psyr_3821at 4546.464 kb on - strand, within Psyr_3821at 4546.468 kb on - strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.561 kb on + strand, within Psyr_3821at 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.562 kb on - strandat 4546.588 kb on + strandat 4546.588 kb on + strandat 4546.589 kb on - strandat 4546.589 kb on - strandat 4546.843 kb on + strand, within Psyr_3822at 4546.844 kb on - strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.854 kb on + strand, within Psyr_3822at 4546.855 kb on - strand, within Psyr_3822at 4546.855 kb on - strand, within Psyr_3822at 4546.889 kb on + strand, within Psyr_3822at 4546.890 kb on - strand, within Psyr_3822at 4546.890 kb on - strand, within Psyr_3822at 4546.983 kb on + strand, within Psyr_3822at 4546.983 kb on + strand, within Psyr_3822at 4546.983 kb on + strand, within Psyr_3822at 4546.983 kb on + strand, within Psyr_3822at 4546.984 kb on - strand, within Psyr_3822at 4546.984 kb on - strand, within Psyr_3822at 4546.984 kb on - strand, within Psyr_3822at 4546.984 kb on - strand, within Psyr_3822at 4546.990 kb on - strand, within Psyr_3822at 4547.004 kb on + strand, within Psyr_3822at 4547.046 kb on + strand, within Psyr_3822at 4547.046 kb on + strand, within Psyr_3822at 4547.046 kb on + strand, within Psyr_3822at 4547.047 kb on - strand, within Psyr_3822at 4547.047 kb on - strand, within Psyr_3822at 4547.067 kb on + strand, within Psyr_3822at 4547.067 kb on + strand, within Psyr_3822at 4547.068 kb on - strand, within Psyr_3822at 4547.068 kb on - strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.301 kb on + strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.302 kb on - strand, within Psyr_3822at 4547.430 kb on + strandat 4547.430 kb on + strandat 4547.430 kb on + strandat 4547.430 kb on + strandat 4547.430 kb on + strandat 4547.431 kb on - strandat 4547.431 kb on - strandat 4547.431 kb on - strandat 4547.431 kb on - strandat 4547.454 kb on + strandat 4547.454 kb on + strandat 4547.455 kb on - strandat 4547.455 kb on - strandat 4547.504 kb on + strandat 4547.508 kb on + strandat 4547.547 kb on + strandat 4547.656 kb on - strandat 4547.687 kb on + strandat 4547.687 kb on + strandat 4547.738 kb on + strandat 4547.912 kb on + strandat 4547.912 kb on + strandat 4547.912 kb on + strandat 4547.912 kb on + strandat 4547.912 kb on + strandat 4547.913 kb on - strandat 4547.913 kb on - strandat 4547.913 kb on - strandat 4547.913 kb on - strandat 4547.913 kb on - strandat 4547.970 kb on + strandat 4547.970 kb on + strandat 4547.970 kb on + strandat 4547.970 kb on + strandat 4547.970 kb on + strandat 4547.970 kb on + strandat 4547.971 kb on - strandat 4547.971 kb on - strandat 4547.971 kb on - strandat 4547.971 kb on - strandat 4548.059 kb on + strandat 4548.155 kb on + strandat 4548.228 kb on - strandat 4548.354 kb on - strand, within Psyr_3823at 4548.354 kb on - strand, within Psyr_3823at 4548.515 kb on + strand, within Psyr_3823

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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4,546,210 + Psyr_3821 0.42 +0.3
4,546,210 + Psyr_3821 0.42 +0.8
4,546,211 - Psyr_3821 0.42 +1.9
4,546,363 + Psyr_3821 0.63 +1.0
4,546,464 - Psyr_3821 0.77 -0.8
4,546,468 - Psyr_3821 0.77 -0.2
4,546,561 + Psyr_3821 0.90 -1.0
4,546,561 + Psyr_3821 0.90 +1.6
4,546,561 + Psyr_3821 0.90 +1.5
4,546,561 + Psyr_3821 0.90 -2.1
4,546,561 + Psyr_3821 0.90 +2.1
4,546,561 + Psyr_3821 0.90 +0.2
4,546,561 + Psyr_3821 0.90 +0.3
4,546,562 - -0.6
4,546,562 - +0.5
4,546,562 - -0.2
4,546,562 - +0.2
4,546,562 - -0.8
4,546,562 - +0.5
4,546,588 + +0.2
4,546,588 + +1.4
4,546,589 - +1.1
4,546,589 - -0.6
4,546,843 + Psyr_3822 0.23 -1.0
4,546,844 - Psyr_3822 0.24 +0.7
4,546,854 + Psyr_3822 0.25 -0.8
4,546,854 + Psyr_3822 0.25 -1.1
4,546,854 + Psyr_3822 0.25 -0.2
4,546,854 + Psyr_3822 0.25 -0.3
4,546,854 + Psyr_3822 0.25 +0.7
4,546,854 + Psyr_3822 0.25 +0.5
4,546,854 + Psyr_3822 0.25 -1.3
4,546,854 + Psyr_3822 0.25 -0.5
4,546,854 + Psyr_3822 0.25 +1.2
4,546,854 + Psyr_3822 0.25 +1.5
4,546,854 + Psyr_3822 0.25 -1.4
4,546,854 + Psyr_3822 0.25 -0.2
4,546,854 + Psyr_3822 0.25 +0.5
4,546,855 - Psyr_3822 0.25 +0.8
4,546,855 - Psyr_3822 0.25 +0.2
4,546,889 + Psyr_3822 0.29 -0.1
4,546,890 - Psyr_3822 0.29 +0.1
4,546,890 - Psyr_3822 0.29 +0.4
4,546,983 + Psyr_3822 0.39 -1.1
4,546,983 + Psyr_3822 0.39 +0.8
4,546,983 + Psyr_3822 0.39 -0.7
4,546,983 + Psyr_3822 0.39 -0.8
4,546,984 - Psyr_3822 0.39 -1.1
4,546,984 - Psyr_3822 0.39 +0.2
4,546,984 - Psyr_3822 0.39 +0.7
4,546,984 - Psyr_3822 0.39 -0.2
4,546,990 - Psyr_3822 0.40 +0.8
4,547,004 + Psyr_3822 0.42 +1.3
4,547,046 + Psyr_3822 0.47 +0.6
4,547,046 + Psyr_3822 0.47 -0.5
4,547,046 + Psyr_3822 0.47 -3.3
4,547,047 - Psyr_3822 0.47 +0.0
4,547,047 - Psyr_3822 0.47 -0.3
4,547,067 + Psyr_3822 0.49 -1.0
4,547,067 + Psyr_3822 0.49 +0.5
4,547,068 - Psyr_3822 0.49 -0.7
4,547,068 - Psyr_3822 0.49 +1.3
4,547,301 + Psyr_3822 0.76 -0.1
4,547,301 + Psyr_3822 0.76 +1.2
4,547,301 + Psyr_3822 0.76 -0.1
4,547,301 + Psyr_3822 0.76 -0.9
4,547,301 + Psyr_3822 0.76 -0.6
4,547,301 + Psyr_3822 0.76 -3.4
4,547,301 + Psyr_3822 0.76 -0.4
4,547,301 + Psyr_3822 0.76 +1.0
4,547,301 + Psyr_3822 0.76 +1.3
4,547,301 + Psyr_3822 0.76 -0.8
4,547,301 + Psyr_3822 0.76 +0.1
4,547,301 + Psyr_3822 0.76 +0.3
4,547,301 + Psyr_3822 0.76 -0.7
4,547,301 + Psyr_3822 0.76 +0.6
4,547,302 - Psyr_3822 0.76 -1.1
4,547,302 - Psyr_3822 0.76 -1.1
4,547,302 - Psyr_3822 0.76 -1.1
4,547,302 - Psyr_3822 0.76 +0.8
4,547,302 - Psyr_3822 0.76 -1.4
4,547,302 - Psyr_3822 0.76 +1.5
4,547,302 - Psyr_3822 0.76 +0.7
4,547,302 - Psyr_3822 0.76 +0.1
4,547,302 - Psyr_3822 0.76 -0.5
4,547,302 - Psyr_3822 0.76 -2.0
4,547,302 - Psyr_3822 0.76 -3.2
4,547,302 - Psyr_3822 0.76 +0.3
4,547,302 - Psyr_3822 0.76 +0.2
4,547,302 - Psyr_3822 0.76 +0.7
4,547,302 - Psyr_3822 0.76 -3.0
4,547,302 - Psyr_3822 0.76 -0.0
4,547,302 - Psyr_3822 0.76 +0.5
4,547,430 + -3.0
4,547,430 + +2.3
4,547,430 + -0.8
4,547,430 + +2.5
4,547,430 + -0.9
4,547,431 - -0.0
4,547,431 - -0.1
4,547,431 - +0.8
4,547,431 - -0.7
4,547,454 + +0.9
4,547,454 + -1.1
4,547,455 - -0.8
4,547,455 - +1.2
4,547,504 + -1.5
4,547,508 + +0.8
4,547,547 + -0.3
4,547,656 - +0.5
4,547,687 + +2.0
4,547,687 + +0.2
4,547,738 + +0.6
4,547,912 + -0.8
4,547,912 + -0.8
4,547,912 + +1.5
4,547,912 + -0.1
4,547,912 + +0.6
4,547,913 - -0.2
4,547,913 - +1.2
4,547,913 - -0.6
4,547,913 - +0.7
4,547,913 - -0.8
4,547,970 + +0.2
4,547,970 + -1.4
4,547,970 + +1.1
4,547,970 + -2.8
4,547,970 + +0.6
4,547,970 + +1.0
4,547,971 - -0.7
4,547,971 - -2.6
4,547,971 - -0.6
4,547,971 - +0.3
4,548,059 + +0.9
4,548,155 + -0.1
4,548,228 - -1.6
4,548,354 - Psyr_3823 0.12 +0.5
4,548,354 - Psyr_3823 0.12 +0.2
4,548,515 + Psyr_3823 0.15 +1.1

Or see this region's nucleotide sequence