Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3742

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3741 and Psyr_3742 are separated by 148 nucleotidesPsyr_3742 and Psyr_3743 are separated by 202 nucleotidesPsyr_3743 and Psyr_3744 are separated by 1 nucleotides Psyr_3741: Psyr_3741 - Polyphosphate:AMP phosphotransferase, at 4,455,375 to 4,456,871 _3741 Psyr_3742: Psyr_3742 - FAD dependent oxidoreductase:Protein of unknown function DUF752, at 4,457,020 to 4,459,017 _3742 Psyr_3743: Psyr_3743 - ABC transporter, at 4,459,220 to 4,459,888 _3743 Psyr_3744: Psyr_3744 - Protein of unknown function DUF214, at 4,459,890 to 4,462,370 _3744 Position (kb) 4457 4458 4459 4460Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4456.220 kb on - strand, within Psyr_3741at 4456.313 kb on - strand, within Psyr_3741at 4456.566 kb on - strand, within Psyr_3741at 4456.566 kb on - strand, within Psyr_3741at 4456.652 kb on + strand, within Psyr_3741at 4456.652 kb on + strand, within Psyr_3741at 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.725 kb on + strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.726 kb on - strandat 4456.776 kb on + strandat 4456.776 kb on + strandat 4456.777 kb on - strandat 4456.777 kb on - strandat 4456.777 kb on - strandat 4456.825 kb on + strandat 4456.825 kb on + strandat 4456.826 kb on - strandat 4457.095 kb on + strandat 4457.392 kb on + strand, within Psyr_3742at 4457.392 kb on + strand, within Psyr_3742at 4457.392 kb on + strand, within Psyr_3742at 4457.392 kb on + strand, within Psyr_3742at 4457.392 kb on + strand, within Psyr_3742at 4457.393 kb on - strand, within Psyr_3742at 4457.393 kb on - strand, within Psyr_3742at 4457.393 kb on - strand, within Psyr_3742at 4457.451 kb on + strand, within Psyr_3742at 4457.451 kb on + strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.452 kb on - strand, within Psyr_3742at 4457.613 kb on + strand, within Psyr_3742at 4457.614 kb on - strand, within Psyr_3742at 4457.614 kb on - strand, within Psyr_3742at 4457.614 kb on - strand, within Psyr_3742at 4457.614 kb on - strand, within Psyr_3742at 4457.620 kb on - strand, within Psyr_3742at 4457.620 kb on - strand, within Psyr_3742at 4457.772 kb on - strand, within Psyr_3742at 4457.941 kb on + strand, within Psyr_3742at 4457.941 kb on + strand, within Psyr_3742at 4457.941 kb on + strand, within Psyr_3742at 4457.941 kb on + strand, within Psyr_3742at 4457.942 kb on - strand, within Psyr_3742at 4457.942 kb on - strand, within Psyr_3742at 4457.942 kb on - strand, within Psyr_3742at 4457.942 kb on - strand, within Psyr_3742at 4458.388 kb on - strand, within Psyr_3742at 4458.505 kb on + strand, within Psyr_3742at 4458.506 kb on - strand, within Psyr_3742at 4458.506 kb on - strand, within Psyr_3742at 4458.506 kb on - strand, within Psyr_3742at 4458.534 kb on + strand, within Psyr_3742at 4458.766 kb on + strand, within Psyr_3742at 4458.832 kb on + strandat 4458.833 kb on - strandat 4458.833 kb on - strandat 4458.833 kb on - strandat 4458.838 kb on - strandat 4459.066 kb on + strandat 4459.066 kb on + strandat 4459.158 kb on + strandat 4459.239 kb on + strandat 4459.240 kb on - strandat 4459.251 kb on - strandat 4459.659 kb on + strand, within Psyr_3743at 4459.660 kb on - strand, within Psyr_3743at 4459.750 kb on - strand, within Psyr_3743at 4459.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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4,456,220 - Psyr_3741 0.56 -1.1
4,456,313 - Psyr_3741 0.63 +1.3
4,456,566 - Psyr_3741 0.80 -0.3
4,456,566 - Psyr_3741 0.80 +0.4
4,456,652 + Psyr_3741 0.85 +1.5
4,456,652 + Psyr_3741 0.85 -0.6
4,456,725 + -0.7
4,456,725 + -1.0
4,456,725 + -0.5
4,456,725 + -1.3
4,456,725 + -1.4
4,456,725 + +0.7
4,456,725 + -2.0
4,456,725 + +1.7
4,456,725 + +1.5
4,456,726 - +0.8
4,456,726 - +0.5
4,456,726 - +2.0
4,456,726 - -0.5
4,456,726 - -1.7
4,456,726 - -1.2
4,456,726 - -1.2
4,456,726 - +0.5
4,456,776 + -0.6
4,456,776 + -0.5
4,456,777 - +0.1
4,456,777 - -1.1
4,456,777 - +1.1
4,456,825 + -1.5
4,456,825 + -1.1
4,456,826 - +0.6
4,457,095 + -0.6
4,457,392 + Psyr_3742 0.19 -0.9
4,457,392 + Psyr_3742 0.19 +0.8
4,457,392 + Psyr_3742 0.19 +0.4
4,457,392 + Psyr_3742 0.19 +0.2
4,457,392 + Psyr_3742 0.19 +1.0
4,457,393 - Psyr_3742 0.19 +0.7
4,457,393 - Psyr_3742 0.19 -0.5
4,457,393 - Psyr_3742 0.19 -2.2
4,457,451 + Psyr_3742 0.22 -0.7
4,457,451 + Psyr_3742 0.22 +0.3
4,457,452 - Psyr_3742 0.22 -0.9
4,457,452 - Psyr_3742 0.22 +0.5
4,457,452 - Psyr_3742 0.22 +1.4
4,457,452 - Psyr_3742 0.22 +0.1
4,457,452 - Psyr_3742 0.22 -1.8
4,457,452 - Psyr_3742 0.22 +0.3
4,457,613 + Psyr_3742 0.30 +0.4
4,457,614 - Psyr_3742 0.30 -0.6
4,457,614 - Psyr_3742 0.30 +1.3
4,457,614 - Psyr_3742 0.30 +0.1
4,457,614 - Psyr_3742 0.30 +1.3
4,457,620 - Psyr_3742 0.30 -0.2
4,457,620 - Psyr_3742 0.30 +0.9
4,457,772 - Psyr_3742 0.38 +1.4
4,457,941 + Psyr_3742 0.46 +0.1
4,457,941 + Psyr_3742 0.46 +0.8
4,457,941 + Psyr_3742 0.46 -0.4
4,457,941 + Psyr_3742 0.46 +0.8
4,457,942 - Psyr_3742 0.46 +2.3
4,457,942 - Psyr_3742 0.46 +0.3
4,457,942 - Psyr_3742 0.46 -0.8
4,457,942 - Psyr_3742 0.46 -0.8
4,458,388 - Psyr_3742 0.68 -0.6
4,458,505 + Psyr_3742 0.74 +0.3
4,458,506 - Psyr_3742 0.74 +0.3
4,458,506 - Psyr_3742 0.74 +3.1
4,458,506 - Psyr_3742 0.74 +0.4
4,458,534 + Psyr_3742 0.76 -0.5
4,458,766 + Psyr_3742 0.87 +0.2
4,458,832 + -0.8
4,458,833 - +0.1
4,458,833 - +0.1
4,458,833 - +0.9
4,458,838 - +0.4
4,459,066 + -1.5
4,459,066 + +0.1
4,459,158 + -2.4
4,459,239 + -0.1
4,459,240 - +2.1
4,459,251 - -0.5
4,459,659 + Psyr_3743 0.66 +1.3
4,459,660 - Psyr_3743 0.66 -0.3
4,459,750 - Psyr_3743 0.79 +0.7
4,459,964 - -0.7

Or see this region's nucleotide sequence