Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3705

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3703 and Psyr_3704 are separated by 99 nucleotidesPsyr_3704 and Psyr_3705 are separated by 6 nucleotidesPsyr_3705 and Psyr_3706 are separated by 194 nucleotidesPsyr_3706 and Psyr_3707 are separated by 66 nucleotides Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947 _3703 Psyr_3704: Psyr_3704 - conserved hypothetical protein, at 4,391,047 to 4,391,718 _3704 Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549 _3705 Psyr_3706: Psyr_3706 - Protein of unknown function DUF335, at 4,392,744 to 4,393,238 _3706 Psyr_3707: Psyr_3707 - Sodium:dicarboxylate symporter, at 4,393,305 to 4,394,657 _3707 Position (kb) 4391 4392 4393Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4391.056 kb on + strandat 4391.056 kb on + strandat 4391.074 kb on + strandat 4391.074 kb on + strandat 4391.178 kb on + strand, within Psyr_3704at 4391.179 kb on - strand, within Psyr_3704at 4391.179 kb on - strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.731 kb on - strandat 4391.975 kb on + strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4392.002 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strandat 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.297 kb on - strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.551 kb on + strandat 4392.551 kb on + strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.617 kb on + strandat 4392.618 kb on - strandat 4392.618 kb on - strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.701 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.739 kb on - strandat 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4393.038 kb on + strand, within Psyr_3706at 4393.039 kb on - strand, within Psyr_3706at 4393.068 kb on + strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.105 kb on - strand, within Psyr_3706at 4393.236 kb on + strandat 4393.319 kb on + strandat 4393.325 kb on + strandat 4393.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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4,391,056 + +0.2
4,391,056 + -0.1
4,391,074 + -0.2
4,391,074 + +0.6
4,391,178 + Psyr_3704 0.19 -3.2
4,391,179 - Psyr_3704 0.20 -0.1
4,391,179 - Psyr_3704 0.20 -1.7
4,391,467 + Psyr_3704 0.62 +0.4
4,391,467 + Psyr_3704 0.62 -2.3
4,391,467 + Psyr_3704 0.62 +1.0
4,391,467 + Psyr_3704 0.62 -0.1
4,391,467 + Psyr_3704 0.62 -0.3
4,391,467 + Psyr_3704 0.62 -1.4
4,391,468 - Psyr_3704 0.63 +0.6
4,391,468 - Psyr_3704 0.63 +0.1
4,391,468 - Psyr_3704 0.63 +2.5
4,391,468 - Psyr_3704 0.63 +0.3
4,391,468 - Psyr_3704 0.63 -0.2
4,391,731 - +0.0
4,391,975 + Psyr_3705 0.30 +0.4
4,391,976 - Psyr_3705 0.30 +0.4
4,391,976 - Psyr_3705 0.30 +1.5
4,392,002 + Psyr_3705 0.34 +0.2
4,392,170 + Psyr_3705 0.54 -0.2
4,392,170 + Psyr_3705 0.54 -0.8
4,392,171 - Psyr_3705 0.54 +0.8
4,392,171 - Psyr_3705 0.54 +2.2
4,392,171 - Psyr_3705 0.54 -1.1
4,392,171 - Psyr_3705 0.54 -0.7
4,392,248 + Psyr_3705 0.63 +0.2
4,392,248 + Psyr_3705 0.63 -1.8
4,392,248 + -0.4
4,392,249 - Psyr_3705 0.64 +0.3
4,392,249 - Psyr_3705 0.64 -0.7
4,392,249 - Psyr_3705 0.64 +1.0
4,392,249 - Psyr_3705 0.64 -1.8
4,392,297 - Psyr_3705 0.69 -1.4
4,392,413 + Psyr_3705 0.83 -1.1
4,392,413 + Psyr_3705 0.83 -1.3
4,392,413 + Psyr_3705 0.83 -0.1
4,392,413 + Psyr_3705 0.83 -0.2
4,392,413 + Psyr_3705 0.83 +0.7
4,392,413 + Psyr_3705 0.83 -1.0
4,392,414 - Psyr_3705 0.84 +1.0
4,392,414 - Psyr_3705 0.84 +1.0
4,392,414 - Psyr_3705 0.84 -4.0
4,392,414 - Psyr_3705 0.84 -0.8
4,392,414 - Psyr_3705 0.84 -1.2
4,392,414 - Psyr_3705 0.84 -0.0
4,392,414 - Psyr_3705 0.84 -0.4
4,392,551 + +0.2
4,392,551 + -0.4
4,392,552 - +1.0
4,392,552 - -0.4
4,392,552 - +0.6
4,392,552 - -0.7
4,392,552 - +1.6
4,392,617 + -0.8
4,392,618 - -1.6
4,392,618 - +0.3
4,392,621 + -0.4
4,392,621 + +0.3
4,392,621 + +0.6
4,392,621 + +0.8
4,392,621 + -0.4
4,392,622 - -0.2
4,392,622 - -2.0
4,392,622 - -1.4
4,392,622 - -0.2
4,392,622 - -2.4
4,392,701 - +0.4
4,392,717 - -0.6
4,392,717 - -0.2
4,392,717 - +1.6
4,392,717 - -1.9
4,392,717 - -0.9
4,392,717 - -1.4
4,392,739 - +1.2
4,392,906 + Psyr_3706 0.33 -0.7
4,392,906 + Psyr_3706 0.33 -1.3
4,392,906 + Psyr_3706 0.33 +1.0
4,392,907 - Psyr_3706 0.33 -1.5
4,392,907 - Psyr_3706 0.33 +0.6
4,392,907 - Psyr_3706 0.33 +1.4
4,392,907 - Psyr_3706 0.33 -0.9
4,392,907 - Psyr_3706 0.33 -0.8
4,393,038 + Psyr_3706 0.59 -0.7
4,393,039 - Psyr_3706 0.60 +0.2
4,393,068 + Psyr_3706 0.65 +1.6
4,393,069 - Psyr_3706 0.66 +0.2
4,393,069 - Psyr_3706 0.66 -0.8
4,393,098 + Psyr_3706 0.72 -0.0
4,393,098 + Psyr_3706 0.72 +0.9
4,393,104 + Psyr_3706 0.73 +0.6
4,393,104 + Psyr_3706 0.73 +0.7
4,393,105 - Psyr_3706 0.73 +1.3
4,393,236 + +1.2
4,393,319 + -1.4
4,393,325 + +0.7
4,393,326 - -0.1

Or see this region's nucleotide sequence