Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3124

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
3,744,489	+		Psyr_3123	0.22	-1.0
3,744,490	-		Psyr_3123	0.22	+0.1
3,744,490	-		Psyr_3123	0.22	-1.8
3,744,741	-		Psyr_3123	0.44	+0.8
3,744,741	-		Psyr_3123	0.44	-0.1
3,744,834	+		Psyr_3123	0.52	-0.9
3,744,942	+		Psyr_3123	0.62	+0.3
3,744,943	-		Psyr_3123	0.62	+0.3
3,744,966	+		Psyr_3123	0.64	+0.2
3,744,966	+		Psyr_3123	0.64	-1.9
3,744,966	+		Psyr_3123	0.64	+0.2
3,744,966	+		Psyr_3123	0.64	+2.7
3,744,966	+		Psyr_3123	0.64	-1.0
3,744,967	-		Psyr_3123	0.64	-2.9
3,744,975	+		Psyr_3123	0.65	-2.2
3,744,975	+		Psyr_3123	0.65	-2.5
3,744,975	+		Psyr_3123	0.65	+0.3
3,744,975	+		Psyr_3123	0.65	-1.0
3,744,976	-		Psyr_3123	0.65	-2.4
3,744,976	-		Psyr_3123	0.65	-1.2
3,744,976	-		Psyr_3123	0.65	+0.1
3,744,976	-		Psyr_3123	0.65	-0.2
3,744,976	-		Psyr_3123	0.65	-2.5
3,744,976	-		Psyr_3123	0.65	-0.9
3,744,978	+		Psyr_3123	0.65	-0.2
3,744,978	+		Psyr_3123	0.65	+0.5
3,744,979	-		Psyr_3123	0.65	-0.9
3,744,979	-		Psyr_3123	0.65	-1.5
3,745,055	+		Psyr_3123	0.72	+1.6
3,745,108	+		Psyr_3123	0.76	-1.2
3,745,175	-		Psyr_3123	0.82	-2.1
3,745,177	-		Psyr_3123	0.82	-1.2
3,745,224	+		Psyr_3123	0.87	+0.8
3,745,225	-		Psyr_3123	0.87	-1.1
3,745,269	+				+1.1
3,745,269	+				-0.9
3,745,269	+				+0.1
3,745,269	+				+0.0
3,745,269	+				+0.1
3,745,269	+				+0.3
3,745,269	+				+1.1
3,745,270	-				-1.6
3,745,270	-				-0.6
3,745,270	-				-0.3
3,745,496	+				+0.8
3,745,496	+				-2.4
3,745,496	+				-4.2
3,745,496	+				-0.7
3,745,496	+				-1.2
3,745,496	+				-3.2
3,745,497	-				+1.6
3,745,497	-				-0.6
3,745,497	-				+0.8
3,745,497	-				-0.6
3,745,497	-				+1.3
3,745,497	-				+1.0
3,745,497	-				-0.6
3,745,497	-				-0.1
3,745,497	-				+0.6
3,745,498	+				-0.4
3,745,498	+				-2.1
3,745,498	+				-1.5
3,745,498	+				+0.2
3,745,499	-				+0.4
3,745,538	-				-1.5
3,745,543	+				-1.2
3,745,543	+				-1.0
3,745,543	+				+0.8
3,745,544	-				+0.5
3,745,544	-				+0.2
3,745,544	-				+1.2
3,745,544	-				+0.7
3,745,544	-				-0.2
3,745,570	+				-1.8
3,745,570	+				+0.4
3,745,571	-				+1.5
3,745,571	-				+0.3
3,745,630	+				+1.2
3,745,630	+				-0.2
3,745,630	+				+0.8
3,745,630	+				+0.1
3,745,630	+				+0.1
3,745,631	-				+0.6
3,745,631	-				+0.8
3,745,631	-				+0.8
3,745,633	+				+2.2
3,745,633	+				-0.5
3,745,655	+				+0.4
3,745,655	+				-0.8
3,745,655	+				+0.9
3,745,655	+				-0.2
3,745,655	+				+0.7
3,745,655	+				-0.1
3,745,655	+				+0.2
3,745,655	+				-0.8
3,745,655	+				-0.3
3,745,655	+				+0.7
3,745,655	+				-0.0
3,745,656	-				+0.3
3,745,656	-				+0.4
3,745,656	-				-0.4
3,745,656	-				-0.1
3,745,656	-				-1.2
3,745,656	-				+0.5
3,745,656	-				+0.2
3,745,656	-				+0.6
3,745,656	-				+1.2
3,745,657	+				+0.7
3,745,657	+				-0.1
3,745,657	+				-0.3
3,745,657	+				-0.5
3,745,658	-				+1.0
3,745,658	-				-0.2
3,745,658	-				+0.5
3,745,658	-				-0.1
3,745,658	-				+0.1
3,745,658	-				+0.1
3,745,658	-				+0.4
3,745,711	+		Psyr_3124	0.10	-1.8
3,745,711	+		Psyr_3124	0.10	-1.3
3,745,858	+		Psyr_3124	0.17	+0.8
3,745,859	-		Psyr_3124	0.17	+1.2
3,745,864	+		Psyr_3124	0.18	+0.6
3,745,864	+		Psyr_3124	0.18	-2.7
3,745,865	-		Psyr_3124	0.18	-1.2
3,745,865	-		Psyr_3124	0.18	+0.2
3,746,005	+		Psyr_3124	0.24	+0.2
3,746,006	-		Psyr_3124	0.24	+0.2
3,746,065	+		Psyr_3124	0.27	-0.5
3,746,066	-		Psyr_3124	0.27	-1.0
3,746,149	+		Psyr_3124	0.31	+0.1
3,746,176	+		Psyr_3124	0.32	+0.2
3,746,177	-		Psyr_3124	0.32	+0.6
3,746,177	-		Psyr_3124	0.32	-0.3
3,746,251	+		Psyr_3124	0.36	-2.0
3,746,251	+		Psyr_3124	0.36	-0.1
3,746,252	-		Psyr_3124	0.36	+1.8
3,746,252	-		Psyr_3124	0.36	-0.6
3,746,436	+		Psyr_3124	0.44	+0.1
3,746,436	+		Psyr_3124	0.44	+1.3
3,746,436	+		Psyr_3124	0.44	-3.4
3,746,436	+		Psyr_3124	0.44	-0.9
3,746,436	+		Psyr_3124	0.44	-1.5
3,746,470	+		Psyr_3124	0.46	-1.8
3,746,470	+		Psyr_3124	0.46	-2.1
3,746,471	-		Psyr_3124	0.46	-1.9
3,746,471	-		Psyr_3124	0.46	-1.4
3,746,471	-		Psyr_3124	0.46	+0.6
3,746,477	-		Psyr_3124	0.46	-1.7
3,746,477	-		Psyr_3124	0.46	+0.5
3,746,477	-		Psyr_3124	0.46	+0.3
3,746,477	-		Psyr_3124	0.46	-2.5
3,746,584	+		Psyr_3124	0.51	+0.6
3,746,674	-		Psyr_3124	0.56	-0.9
3,746,921	-		Psyr_3124	0.67	-1.2
3,746,952	-		Psyr_3124	0.69	-1.0
3,747,139	+		Psyr_3124	0.77	+0.7
3,747,139	+		Psyr_3124	0.77	+0.5
3,747,270	-		Psyr_3124	0.84	+0.5
3,747,575	+				+1.6
3,747,576	-				-1.9
3,747,576	-				-0.4
3,747,576	-				-1.5
3,747,605	+				+2.4
3,747,620	+				+0.9
3,747,620	+				+1.3
3,747,620	+				-2.2
3,747,620	+				-0.2
3,747,620	+				+1.1
3,747,620	+				+1.1
3,747,620	+				-1.3
3,747,620	+				-0.3
3,747,620	+				-3.8
3,747,621	-				+3.1
3,747,621	-				-0.5
3,747,621	-				-3.0
3,747,621	-				+1.4
3,747,621	-				-0.3
3,747,739	-				-2.1
3,747,739	-				-0.7
3,747,747	+				-0.0
3,747,785	-				+0.2
3,747,785	-				-1.3
3,747,791	+				+0.5
3,747,867	+				+1.1
3,747,867	+				-1.2
3,747,867	+				-0.5
3,747,868	-				+0.3
3,748,050	+		Psyr_3125	0.38	-0.3
3,748,084	+		Psyr_3125	0.43	-0.9
3,748,084	+		Psyr_3125	0.43	-1.1
3,748,084	+		Psyr_3125	0.43	+1.3
3,748,085	-		Psyr_3125	0.43	+1.2
3,748,085	-		Psyr_3125	0.43	+0.3
3,748,085	-		Psyr_3125	0.43	-1.1
3,748,179	+		Psyr_3125	0.58	-0.2
3,748,180	-		Psyr_3125	0.58	+0.8
3,748,205	+		Psyr_3125	0.62	+1.8
3,748,206	-		Psyr_3125	0.62	+0.4
3,748,592	+				-0.1
3,748,592	+				+0.8
3,748,592	+				-1.5
3,748,593	-				+0.4
3,748,606	+				+0.6
3,748,606	+				-0.3
3,748,606	+				-0.7
3,748,607	-				-0.0
3,748,607	-				+0.6
3,748,607	-				+0.5
3,748,607	-				-0.9
3,748,607	-				+2.1
3,748,607	-				-1.0