Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2703

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2702 and Psyr_2703 overlap by 13 nucleotidesPsyr_2703 and Psyr_2704 are separated by 419 nucleotides Psyr_2702: Psyr_2702 - UDP-galactopyranose mutase, at 3,282,649 to 3,283,830 _2702 Psyr_2703: Psyr_2703 - conserved hypothetical protein, at 3,283,818 to 3,285,002 _2703 Psyr_2704: Psyr_2704 - UDP-galactose 4-epimerase, at 3,285,422 to 3,286,450 _2704 Position (kb) 3283 3284 3285 3286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3282.821 kb on + strand, within Psyr_2702at 3282.821 kb on + strand, within Psyr_2702at 3282.822 kb on - strand, within Psyr_2702at 3282.830 kb on + strand, within Psyr_2702at 3282.830 kb on + strand, within Psyr_2702at 3282.831 kb on - strand, within Psyr_2702at 3282.831 kb on - strand, within Psyr_2702at 3282.864 kb on - strand, within Psyr_2702at 3282.866 kb on + strand, within Psyr_2702at 3282.866 kb on + strand, within Psyr_2702at 3282.867 kb on - strand, within Psyr_2702at 3282.930 kb on + strand, within Psyr_2702at 3282.942 kb on - strand, within Psyr_2702at 3283.064 kb on + strand, within Psyr_2702at 3283.065 kb on - strand, within Psyr_2702at 3283.080 kb on - strand, within Psyr_2702at 3283.100 kb on + strand, within Psyr_2702at 3283.115 kb on + strand, within Psyr_2702at 3283.116 kb on - strand, within Psyr_2702at 3283.184 kb on - strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.245 kb on - strand, within Psyr_2702at 3283.245 kb on - strand, within Psyr_2702at 3283.273 kb on + strand, within Psyr_2702at 3283.274 kb on - strand, within Psyr_2702at 3283.335 kb on - strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.473 kb on - strand, within Psyr_2702at 3283.525 kb on + strand, within Psyr_2702at 3283.526 kb on - strand, within Psyr_2702at 3283.567 kb on - strand, within Psyr_2702at 3283.567 kb on - strand, within Psyr_2702at 3283.580 kb on + strand, within Psyr_2702at 3283.580 kb on + strand, within Psyr_2702at 3283.581 kb on - strand, within Psyr_2702at 3283.581 kb on - strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.614 kb on + strand, within Psyr_2702at 3283.614 kb on + strand, within Psyr_2702at 3283.615 kb on - strand, within Psyr_2702at 3283.625 kb on + strand, within Psyr_2702at 3283.664 kb on + strand, within Psyr_2702at 3283.784 kb on + strandat 3283.784 kb on + strandat 3283.784 kb on + strandat 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3284.026 kb on + strand, within Psyr_2703at 3284.167 kb on + strand, within Psyr_2703at 3284.167 kb on + strand, within Psyr_2703at 3284.168 kb on - strand, within Psyr_2703at 3284.199 kb on + strand, within Psyr_2703at 3284.199 kb on + strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.482 kb on - strand, within Psyr_2703at 3284.499 kb on - strand, within Psyr_2703at 3284.650 kb on + strand, within Psyr_2703at 3284.700 kb on + strand, within Psyr_2703at 3284.852 kb on - strand, within Psyr_2703at 3284.931 kb on + strandat 3284.931 kb on + strandat 3285.002 kb on + strandat 3285.002 kb on + strandat 3285.003 kb on - strandat 3285.020 kb on + strandat 3285.021 kb on - strandat 3285.109 kb on + strandat 3285.109 kb on + strandat 3285.109 kb on + strandat 3285.110 kb on - strandat 3285.110 kb on - strandat 3285.110 kb on - strandat 3285.110 kb on - strandat 3285.110 kb on - strandat 3285.110 kb on - strandat 3285.141 kb on + strandat 3285.141 kb on + strandat 3285.142 kb on - strandat 3285.142 kb on - strandat 3285.142 kb on - strandat 3285.142 kb on - strandat 3285.142 kb on - strandat 3285.245 kb on + strandat 3285.245 kb on + strandat 3285.287 kb on + strandat 3285.288 kb on - strandat 3285.449 kb on + strandat 3285.450 kb on - strandat 3285.450 kb on - strandat 3285.511 kb on + strandat 3285.550 kb on - strand, within Psyr_2704at 3285.705 kb on - strand, within Psyr_2704at 3285.864 kb on - strand, within Psyr_2704at 3285.948 kb on - strand, within Psyr_2704

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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3,282,821 + Psyr_2702 0.15 -1.0
3,282,821 + Psyr_2702 0.15 -1.5
3,282,822 - Psyr_2702 0.15 -0.3
3,282,830 + Psyr_2702 0.15 +0.1
3,282,830 + Psyr_2702 0.15 +1.1
3,282,831 - Psyr_2702 0.15 +0.3
3,282,831 - Psyr_2702 0.15 -0.9
3,282,864 - Psyr_2702 0.18 -1.7
3,282,866 + Psyr_2702 0.18 +0.8
3,282,866 + Psyr_2702 0.18 -0.3
3,282,867 - Psyr_2702 0.18 +0.7
3,282,930 + Psyr_2702 0.24 -2.6
3,282,942 - Psyr_2702 0.25 -0.5
3,283,064 + Psyr_2702 0.35 -1.7
3,283,065 - Psyr_2702 0.35 -0.3
3,283,080 - Psyr_2702 0.36 -0.9
3,283,100 + Psyr_2702 0.38 -0.3
3,283,115 + Psyr_2702 0.39 -2.0
3,283,116 - Psyr_2702 0.40 +0.8
3,283,184 - Psyr_2702 0.45 -1.0
3,283,244 + Psyr_2702 0.50 -1.4
3,283,244 + Psyr_2702 0.50 -2.2
3,283,244 + Psyr_2702 0.50 +1.6
3,283,245 - Psyr_2702 0.50 -2.8
3,283,245 - Psyr_2702 0.50 +0.7
3,283,273 + Psyr_2702 0.53 -0.7
3,283,274 - Psyr_2702 0.53 +0.3
3,283,335 - Psyr_2702 0.58 -0.3
3,283,355 + Psyr_2702 0.60 +0.3
3,283,355 + Psyr_2702 0.60 +1.0
3,283,355 + Psyr_2702 0.60 -0.6
3,283,355 + Psyr_2702 0.60 -0.4
3,283,355 + Psyr_2702 0.60 -2.0
3,283,356 - Psyr_2702 0.60 +0.1
3,283,356 - Psyr_2702 0.60 -0.4
3,283,356 - Psyr_2702 0.60 -1.4
3,283,356 - Psyr_2702 0.60 +0.3
3,283,356 - Psyr_2702 0.60 +3.7
3,283,356 - Psyr_2702 0.60 -0.1
3,283,356 - Psyr_2702 0.60 +0.0
3,283,473 - Psyr_2702 0.70 -1.4
3,283,525 + Psyr_2702 0.74 -0.9
3,283,526 - Psyr_2702 0.74 -2.0
3,283,567 - Psyr_2702 0.78 -0.9
3,283,567 - Psyr_2702 0.78 +2.7
3,283,580 + Psyr_2702 0.79 -2.7
3,283,580 + Psyr_2702 0.79 +0.3
3,283,581 - Psyr_2702 0.79 -0.9
3,283,581 - Psyr_2702 0.79 +0.3
3,283,612 + Psyr_2702 0.81 +0.1
3,283,612 + Psyr_2702 0.81 -0.9
3,283,612 + Psyr_2702 0.81 -1.9
3,283,613 - Psyr_2702 0.82 -1.2
3,283,613 - Psyr_2702 0.82 -2.6
3,283,613 - Psyr_2702 0.82 -0.9
3,283,613 - Psyr_2702 0.82 -1.4
3,283,613 - Psyr_2702 0.82 -2.8
3,283,613 - Psyr_2702 0.82 -1.2
3,283,613 - Psyr_2702 0.82 -0.9
3,283,613 - Psyr_2702 0.82 +2.7
3,283,613 - Psyr_2702 0.82 -0.9
3,283,614 + Psyr_2702 0.82 -1.4
3,283,614 + Psyr_2702 0.82 +0.4
3,283,615 - Psyr_2702 0.82 -0.7
3,283,625 + Psyr_2702 0.83 -0.0
3,283,664 + Psyr_2702 0.86 -0.9
3,283,784 + -1.7
3,283,784 + -0.0
3,283,784 + -0.6
3,283,943 + Psyr_2703 0.11 +0.1
3,283,943 + Psyr_2703 0.11 +0.1
3,283,943 + Psyr_2703 0.11 -0.4
3,283,943 + Psyr_2703 0.11 -0.9
3,283,943 + Psyr_2703 0.11 +1.1
3,283,943 + Psyr_2703 0.11 +0.1
3,283,943 + Psyr_2703 0.11 +1.8
3,283,944 - Psyr_2703 0.11 +1.6
3,283,944 - Psyr_2703 0.11 -0.9
3,283,944 - Psyr_2703 0.11 +1.1
3,284,026 + Psyr_2703 0.18 -0.8
3,284,167 + Psyr_2703 0.29 -1.9
3,284,167 + Psyr_2703 0.29 -0.0
3,284,168 - Psyr_2703 0.30 +0.1
3,284,199 + Psyr_2703 0.32 -0.3
3,284,199 + Psyr_2703 0.32 +0.8
3,284,200 - Psyr_2703 0.32 -0.6
3,284,200 - Psyr_2703 0.32 +1.1
3,284,200 - Psyr_2703 0.32 +0.1
3,284,200 - Psyr_2703 0.32 +0.9
3,284,200 - Psyr_2703 0.32 +0.7
3,284,368 + Psyr_2703 0.46 +0.3
3,284,368 + Psyr_2703 0.46 +1.3
3,284,368 + Psyr_2703 0.46 +0.0
3,284,368 + Psyr_2703 0.46 -0.4
3,284,368 + Psyr_2703 0.46 -1.7
3,284,368 + Psyr_2703 0.46 -0.6
3,284,368 + Psyr_2703 0.46 +0.1
3,284,368 + Psyr_2703 0.46 -0.9
3,284,368 + Psyr_2703 0.46 -2.3
3,284,368 + Psyr_2703 0.46 +1.1
3,284,368 + Psyr_2703 0.46 +1.6
3,284,368 + Psyr_2703 0.46 -1.2
3,284,368 + Psyr_2703 0.46 +0.1
3,284,369 - Psyr_2703 0.46 +5.0
3,284,369 - Psyr_2703 0.46 +0.3
3,284,369 - Psyr_2703 0.46 -0.4
3,284,369 - Psyr_2703 0.46 +1.7
3,284,369 - Psyr_2703 0.46 -1.2
3,284,369 - Psyr_2703 0.46 +0.4
3,284,369 - Psyr_2703 0.46 +0.6
3,284,369 - Psyr_2703 0.46 +0.4
3,284,369 - Psyr_2703 0.46 +0.0
3,284,369 - Psyr_2703 0.46 -0.4
3,284,369 - Psyr_2703 0.46 -1.4
3,284,369 - Psyr_2703 0.46 +0.4
3,284,369 - Psyr_2703 0.46 -0.4
3,284,369 - Psyr_2703 0.46 -0.9
3,284,482 - Psyr_2703 0.56 +0.5
3,284,499 - Psyr_2703 0.57 -1.3
3,284,650 + Psyr_2703 0.70 +1.1
3,284,700 + Psyr_2703 0.74 -3.0
3,284,852 - Psyr_2703 0.87 +1.1
3,284,931 + -0.2
3,284,931 + +0.1
3,285,002 + +0.4
3,285,002 + +0.1
3,285,003 - -1.4
3,285,020 + -1.4
3,285,021 - +0.6
3,285,109 + -3.6
3,285,109 + -1.1
3,285,109 + -1.4
3,285,110 - -0.8
3,285,110 - -0.2
3,285,110 - +0.1
3,285,110 - -0.1
3,285,110 - -1.7
3,285,110 - -1.2
3,285,141 + +0.1
3,285,141 + -1.1
3,285,142 - -0.4
3,285,142 - -2.4
3,285,142 - +4.0
3,285,142 - +0.3
3,285,142 - +0.5
3,285,245 + +0.2
3,285,245 + -0.1
3,285,287 + +0.0
3,285,288 - -0.3
3,285,449 + -0.4
3,285,450 - +0.9
3,285,450 - -2.8
3,285,511 + -2.2
3,285,550 - Psyr_2704 0.12 -1.4
3,285,705 - Psyr_2704 0.28 -0.4
3,285,864 - Psyr_2704 0.43 +0.6
3,285,948 - Psyr_2704 0.51 +1.1

Or see this region's nucleotide sequence