Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2701

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
3,280,567	+		Psyr_2700	0.51	-1.2
3,280,568	-		Psyr_2700	0.51	+0.1
3,280,666	+		Psyr_2700	0.57	+0.6
3,280,732	+		Psyr_2700	0.61	+1.3
3,280,831	+		Psyr_2700	0.67	-1.4
3,280,831	+		Psyr_2700	0.67	-1.3
3,280,831	+		Psyr_2700	0.67	+0.2
3,280,831	+		Psyr_2700	0.67	+1.0
3,280,831	+		Psyr_2700	0.67	+2.1
3,280,832	-		Psyr_2700	0.67	-2.4
3,280,832	-		Psyr_2700	0.67	+0.1
3,280,832	-		Psyr_2700	0.67	-2.0
3,280,978	-		Psyr_2700	0.76	-0.9
3,280,981	+		Psyr_2700	0.76	-0.9
3,280,981	+		Psyr_2700	0.76	-0.3
3,280,981	+		Psyr_2700	0.76	-1.4
3,280,982	-		Psyr_2700	0.76	+0.3
3,280,982	-		Psyr_2700	0.76	+1.7
3,280,982	-		Psyr_2700	0.76	+0.0
3,280,982	-		Psyr_2700	0.76	-1.8
3,281,000	-		Psyr_2700	0.78	-0.5
3,281,002	-		Psyr_2700	0.78	-0.4
3,281,014	+		Psyr_2700	0.78	+0.3
3,281,015	-		Psyr_2700	0.79	-2.9
3,281,015	-		Psyr_2700	0.79	+1.5
3,281,015	-		Psyr_2700	0.79	-1.7
3,281,053	-		Psyr_2700	0.81	+0.1
3,281,293	+				+0.6
3,281,315	-				-1.7
3,281,464	+				-0.4
3,281,464	+				+1.2
3,281,466	+				-0.9
3,281,466	+				-0.4
3,281,467	-				-0.3
3,281,467	-				+0.0
3,281,619	+		Psyr_2701	0.10	-1.9
3,281,692	+				-0.4
3,281,693	-		Psyr_2701	0.17	-1.4
3,281,693	-		Psyr_2701	0.17	+0.7
3,281,693	-		Psyr_2701	0.17	-1.7
3,281,706	-		Psyr_2701	0.18	-1.0
3,281,706	-		Psyr_2701	0.18	-0.1
3,281,745	+		Psyr_2701	0.21	-0.2
3,281,745	+		Psyr_2701	0.21	+0.6
3,281,745	+		Psyr_2701	0.21	-1.2
3,281,745	+		Psyr_2701	0.21	-1.2
3,281,746	-		Psyr_2701	0.21	+1.3
3,281,746	-		Psyr_2701	0.21	+0.2
3,281,872	+		Psyr_2701	0.32	+2.1
3,281,911	-		Psyr_2701	0.36	-1.2
3,282,059	+		Psyr_2701	0.49	+1.8
3,282,059	+		Psyr_2701	0.49	-2.8
3,282,059	+		Psyr_2701	0.49	-2.0
3,282,059	+		Psyr_2701	0.49	-0.8
3,282,060	-		Psyr_2701	0.49	+0.0
3,282,060	-		Psyr_2701	0.49	+0.2
3,282,060	-		Psyr_2701	0.49	+1.0
3,282,060	-		Psyr_2701	0.49	-0.8
3,282,122	+		Psyr_2701	0.54	+0.2
3,282,195	+		Psyr_2701	0.60	-0.1
3,282,195	+		Psyr_2701	0.60	-0.8
3,282,195	+		Psyr_2701	0.60	-0.8
3,282,196	-		Psyr_2701	0.61	+0.3
3,282,196	-		Psyr_2701	0.61	+0.6
3,282,249	+		Psyr_2701	0.65	+0.6
3,282,442	-		Psyr_2701	0.82	+0.8
3,282,488	+		Psyr_2701	0.86	-0.3
3,282,488	+		Psyr_2701	0.86	+1.0
3,282,488	+		Psyr_2701	0.86	-2.0
3,282,488	+		Psyr_2701	0.86	+0.5
3,282,489	-		Psyr_2701	0.86	-0.6
3,282,489	-		Psyr_2701	0.86	-1.0
3,282,716	+				+0.4
3,282,716	+				-0.9
3,282,717	-				+0.7
3,282,755	+				-2.4
3,282,755	+				-4.1
3,282,755	+				-1.4
3,282,756	-				+1.1
3,282,756	-				-1.9
3,282,756	-				+1.6
3,282,756	-				+0.1
3,282,756	-				+1.4
3,282,756	-				+2.5
3,282,756	-				-2.8
3,282,756	-				+0.4
3,282,758	+				+0.6
3,282,758	+				+3.0
3,282,759	-				-3.2
3,282,759	-				-0.9
3,282,759	-				+0.6
3,282,764	+				-0.9
3,282,764	+				-0.2
3,282,765	-				+1.4
3,282,765	-				-1.1
3,282,765	-				-0.9
3,282,765	-				-1.0
3,282,821	+		Psyr_2702	0.15	-1.0
3,282,821	+		Psyr_2702	0.15	-1.5
3,282,822	-		Psyr_2702	0.15	-0.3
3,282,830	+		Psyr_2702	0.15	+0.1
3,282,830	+		Psyr_2702	0.15	+1.1
3,282,831	-		Psyr_2702	0.15	+0.3
3,282,831	-		Psyr_2702	0.15	-0.9
3,282,864	-		Psyr_2702	0.18	-1.7
3,282,866	+		Psyr_2702	0.18	+0.8
3,282,866	+		Psyr_2702	0.18	-0.3
3,282,867	-		Psyr_2702	0.18	+0.7
3,282,930	+		Psyr_2702	0.24	-2.6
3,282,942	-		Psyr_2702	0.25	-0.5
3,283,064	+		Psyr_2702	0.35	-1.7
3,283,065	-		Psyr_2702	0.35	-0.3
3,283,080	-		Psyr_2702	0.36	-0.9
3,283,100	+		Psyr_2702	0.38	-0.3
3,283,115	+		Psyr_2702	0.39	-2.0
3,283,116	-		Psyr_2702	0.40	+0.8
3,283,184	-		Psyr_2702	0.45	-1.0
3,283,244	+		Psyr_2702	0.50	-1.4
3,283,244	+		Psyr_2702	0.50	-2.2
3,283,244	+		Psyr_2702	0.50	+1.6
3,283,245	-		Psyr_2702	0.50	-2.8
3,283,245	-		Psyr_2702	0.50	+0.7
3,283,273	+		Psyr_2702	0.53	-0.7
3,283,274	-		Psyr_2702	0.53	+0.3
3,283,335	-		Psyr_2702	0.58	-0.3
3,283,355	+		Psyr_2702	0.60	+0.3
3,283,355	+		Psyr_2702	0.60	+1.0
3,283,355	+		Psyr_2702	0.60	-0.6
3,283,355	+		Psyr_2702	0.60	-0.4
3,283,355	+		Psyr_2702	0.60	-2.0
3,283,356	-		Psyr_2702	0.60	+0.1
3,283,356	-		Psyr_2702	0.60	-0.4
3,283,356	-		Psyr_2702	0.60	-1.4
3,283,356	-		Psyr_2702	0.60	+0.3
3,283,356	-		Psyr_2702	0.60	+3.7
3,283,356	-		Psyr_2702	0.60	-0.1
3,283,356	-		Psyr_2702	0.60	+0.0
3,283,473	-		Psyr_2702	0.70	-1.4
3,283,525	+		Psyr_2702	0.74	-0.9
3,283,526	-		Psyr_2702	0.74	-2.0
3,283,567	-		Psyr_2702	0.78	-0.9
3,283,567	-		Psyr_2702	0.78	+2.7
3,283,580	+		Psyr_2702	0.79	-2.7
3,283,580	+		Psyr_2702	0.79	+0.3
3,283,581	-		Psyr_2702	0.79	-0.9
3,283,581	-		Psyr_2702	0.79	+0.3
3,283,612	+		Psyr_2702	0.81	+0.1
3,283,612	+		Psyr_2702	0.81	-0.9
3,283,612	+		Psyr_2702	0.81	-1.9
3,283,613	-		Psyr_2702	0.82	-1.2
3,283,613	-		Psyr_2702	0.82	-2.6
3,283,613	-		Psyr_2702	0.82	-0.9
3,283,613	-		Psyr_2702	0.82	-1.4
3,283,613	-		Psyr_2702	0.82	-2.8
3,283,613	-		Psyr_2702	0.82	-1.2
3,283,613	-		Psyr_2702	0.82	-0.9
3,283,613	-		Psyr_2702	0.82	+2.7
3,283,613	-		Psyr_2702	0.82	-0.9
3,283,614	+		Psyr_2702	0.82	-1.4
3,283,614	+		Psyr_2702	0.82	+0.4
3,283,615	-		Psyr_2702	0.82	-0.7
3,283,625	+		Psyr_2702	0.83	-0.0