Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2700

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
3,279,094	+		Psyr_2699	0.76	+0.1
3,279,095	-		Psyr_2699	0.77	+1.5
3,279,095	-		Psyr_2699	0.77	-1.1
3,279,095	-		Psyr_2699	0.77	-0.2
3,279,095	-		Psyr_2699	0.77	+0.1
3,279,095	-		Psyr_2699	0.77	+0.3
3,279,108	+		Psyr_2699	0.78	-0.4
3,279,109	-		Psyr_2699	0.78	-0.4
3,279,162	+		Psyr_2699	0.83	-0.6
3,279,261	+				-0.2
3,279,333	+				-0.5
3,279,333	+				-2.1
3,279,333	+				-2.0
3,279,334	-				+0.2
3,279,334	-				-0.9
3,279,334	-				+0.1
3,279,339	+				-1.6
3,279,339	+				-1.6
3,279,340	-				-0.8
3,279,361	+				+0.0
3,279,361	+				+0.6
3,279,382	+				-1.8
3,279,382	+				+0.8
3,279,383	-				+0.8
3,279,417	+				+1.5
3,279,418	-				+0.4
3,279,525	-				-1.2
3,279,525	-				+0.0
3,279,602	+				-1.4
3,279,643	+				+0.3
3,279,645	+				-1.7
3,279,645	+				-0.9
3,279,645	+				-0.9
3,279,646	-				-1.7
3,279,674	+				+0.8
3,279,674	+				-0.3
3,279,679	+				+0.1
3,279,680	-				-1.5
3,279,682	+				-1.0
3,279,682	+				+0.6
3,279,682	+				-1.2
3,279,683	-				-0.6
3,279,996	+		Psyr_2700	0.15	-3.0
3,279,997	-		Psyr_2700	0.15	-1.0
3,279,997	-		Psyr_2700	0.15	+0.4
3,280,059	+		Psyr_2700	0.19	-0.4
3,280,059	+		Psyr_2700	0.19	-0.9
3,280,060	-		Psyr_2700	0.19	+0.2
3,280,060	-		Psyr_2700	0.19	+1.7
3,280,060	-		Psyr_2700	0.19	+0.0
3,280,060	-		Psyr_2700	0.19	-0.2
3,280,144	+		Psyr_2700	0.24	-0.7
3,280,206	+		Psyr_2700	0.28	-0.2
3,280,206	+		Psyr_2700	0.28	+0.1
3,280,207	-		Psyr_2700	0.28	-2.8
3,280,207	-		Psyr_2700	0.28	-0.4
3,280,240	+		Psyr_2700	0.30	-2.4
3,280,242	+		Psyr_2700	0.30	-2.4
3,280,243	-		Psyr_2700	0.30	-2.2
3,280,247	-		Psyr_2700	0.31	-0.2
3,280,281	+		Psyr_2700	0.33	-2.4
3,280,281	+		Psyr_2700	0.33	-1.2
3,280,281	+		Psyr_2700	0.33	-1.2
3,280,331	-		Psyr_2700	0.36	-1.4
3,280,400	-		Psyr_2700	0.40	-0.5
3,280,407	+		Psyr_2700	0.41	-2.9
3,280,407	+		Psyr_2700	0.41	-0.5
3,280,407	+		Psyr_2700	0.41	-0.4
3,280,407	+		Psyr_2700	0.41	-0.4
3,280,408	-		Psyr_2700	0.41	+2.1
3,280,431	+		Psyr_2700	0.42	-0.4
3,280,438	+		Psyr_2700	0.43	-1.2
3,280,439	-		Psyr_2700	0.43	-0.1
3,280,439	-		Psyr_2700	0.43	+0.4
3,280,439	-		Psyr_2700	0.43	+0.6
3,280,481	+		Psyr_2700	0.45	-0.4
3,280,481	+		Psyr_2700	0.45	+0.4
3,280,481	+		Psyr_2700	0.45	-1.2
3,280,482	-		Psyr_2700	0.45	-0.2
3,280,482	-		Psyr_2700	0.45	-2.6
3,280,567	+		Psyr_2700	0.51	-1.2
3,280,568	-		Psyr_2700	0.51	+0.1
3,280,666	+		Psyr_2700	0.57	+0.6
3,280,732	+		Psyr_2700	0.61	+1.3
3,280,831	+		Psyr_2700	0.67	-1.4
3,280,831	+		Psyr_2700	0.67	-1.3
3,280,831	+		Psyr_2700	0.67	+0.2
3,280,831	+		Psyr_2700	0.67	+1.0
3,280,831	+		Psyr_2700	0.67	+2.1
3,280,832	-		Psyr_2700	0.67	-2.4
3,280,832	-		Psyr_2700	0.67	+0.1
3,280,832	-		Psyr_2700	0.67	-2.0
3,280,978	-		Psyr_2700	0.76	-0.9
3,280,981	+		Psyr_2700	0.76	-0.9
3,280,981	+		Psyr_2700	0.76	-0.3
3,280,981	+		Psyr_2700	0.76	-1.4
3,280,982	-		Psyr_2700	0.76	+0.3
3,280,982	-		Psyr_2700	0.76	+1.7
3,280,982	-		Psyr_2700	0.76	+0.0
3,280,982	-		Psyr_2700	0.76	-1.8
3,281,000	-		Psyr_2700	0.78	-0.5
3,281,002	-		Psyr_2700	0.78	-0.4
3,281,014	+		Psyr_2700	0.78	+0.3
3,281,015	-		Psyr_2700	0.79	-2.9
3,281,015	-		Psyr_2700	0.79	+1.5
3,281,015	-		Psyr_2700	0.79	-1.7
3,281,053	-		Psyr_2700	0.81	+0.1
3,281,293	+				+0.6
3,281,315	-				-1.7
3,281,464	+				-0.4
3,281,464	+				+1.2
3,281,466	+				-0.9
3,281,466	+				-0.4
3,281,467	-				-0.3
3,281,467	-				+0.0
3,281,619	+		Psyr_2701	0.10	-1.9
3,281,692	+				-0.4
3,281,693	-		Psyr_2701	0.17	-1.4
3,281,693	-		Psyr_2701	0.17	+0.7
3,281,693	-		Psyr_2701	0.17	-1.7
3,281,706	-		Psyr_2701	0.18	-1.0
3,281,706	-		Psyr_2701	0.18	-0.1
3,281,745	+		Psyr_2701	0.21	-0.2
3,281,745	+		Psyr_2701	0.21	+0.6
3,281,745	+		Psyr_2701	0.21	-1.2
3,281,745	+		Psyr_2701	0.21	-1.2
3,281,746	-		Psyr_2701	0.21	+1.3
3,281,746	-		Psyr_2701	0.21	+0.2
3,281,872	+		Psyr_2701	0.32	+2.1
3,281,911	-		Psyr_2701	0.36	-1.2
3,282,059	+		Psyr_2701	0.49	+1.8
3,282,059	+		Psyr_2701	0.49	-2.8
3,282,059	+		Psyr_2701	0.49	-2.0
3,282,059	+		Psyr_2701	0.49	-0.8
3,282,060	-		Psyr_2701	0.49	+0.0
3,282,060	-		Psyr_2701	0.49	+0.2
3,282,060	-		Psyr_2701	0.49	+1.0
3,282,060	-		Psyr_2701	0.49	-0.8
3,282,122	+		Psyr_2701	0.54	+0.2
3,282,195	+		Psyr_2701	0.60	-0.1
3,282,195	+		Psyr_2701	0.60	-0.8
3,282,195	+		Psyr_2701	0.60	-0.8
3,282,196	-		Psyr_2701	0.61	+0.3
3,282,196	-		Psyr_2701	0.61	+0.6
3,282,249	+		Psyr_2701	0.65	+0.6