Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2682

Experiment: KB with Novobiocin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2681 and Psyr_2682 are separated by 57 nucleotidesPsyr_2682 and Psyr_2683 are separated by 481 nucleotides Psyr_2681: Psyr_2681 - gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03, at 3,252,821 to 3,254,470 _2681 Psyr_2682: Psyr_2682 - methyl-accepting chemotaxis sensory transducer, at 3,254,528 to 3,256,699 _2682 Psyr_2683: Psyr_2683 - arginine:ornithine antiporter, APA family, at 3,257,181 to 3,258,608 _2683 Position (kb) 3254 3255 3256 3257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3253.617 kb on - strand, within Psyr_2681at 3253.845 kb on - strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strandat 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3254.075 kb on + strand, within Psyr_2681at 3254.075 kb on + strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.104 kb on + strand, within Psyr_2681at 3254.399 kb on - strandat 3254.420 kb on + strandat 3254.420 kb on + strandat 3254.421 kb on - strandat 3254.465 kb on + strandat 3254.466 kb on - strandat 3254.466 kb on - strandat 3254.564 kb on + strandat 3254.565 kb on - strandat 3254.721 kb on + strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.824 kb on + strand, within Psyr_2682at 3254.824 kb on + strand, within Psyr_2682at 3254.824 kb on + strand, within Psyr_2682at 3254.825 kb on - strand, within Psyr_2682at 3254.825 kb on - strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.989 kb on + strand, within Psyr_2682at 3254.989 kb on + strand, within Psyr_2682at 3254.990 kb on - strand, within Psyr_2682at 3254.990 kb on - strand, within Psyr_2682at 3255.034 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.442 kb on + strand, within Psyr_2682at 3255.462 kb on - strand, within Psyr_2682at 3255.523 kb on + strand, within Psyr_2682at 3255.638 kb on - strand, within Psyr_2682at 3255.638 kb on - strand, within Psyr_2682at 3255.638 kb on - strand, within Psyr_2682at 3255.640 kb on + strand, within Psyr_2682at 3255.640 kb on + strand, within Psyr_2682at 3255.640 kb on + strand, within Psyr_2682at 3255.641 kb on - strand, within Psyr_2682at 3255.641 kb on - strand, within Psyr_2682at 3255.641 kb on - strand, within Psyr_2682at 3255.641 kb on - strand, within Psyr_2682at 3255.641 kb on - strand, within Psyr_2682at 3255.643 kb on + strand, within Psyr_2682at 3255.643 kb on + strand, within Psyr_2682at 3255.662 kb on + strand, within Psyr_2682at 3255.662 kb on + strand, within Psyr_2682at 3255.663 kb on - strandat 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.763 kb on + strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.764 kb on - strand, within Psyr_2682at 3255.767 kb on + strand, within Psyr_2682at 3255.767 kb on + strand, within Psyr_2682at 3255.768 kb on - strand, within Psyr_2682at 3255.768 kb on - strand, within Psyr_2682at 3255.768 kb on - strand, within Psyr_2682at 3255.768 kb on - strand, within Psyr_2682at 3255.797 kb on + strand, within Psyr_2682at 3255.798 kb on - strand, within Psyr_2682at 3255.798 kb on - strand, within Psyr_2682at 3256.027 kb on - strand, within Psyr_2682at 3256.044 kb on - strand, within Psyr_2682at 3256.046 kb on + strand, within Psyr_2682at 3256.047 kb on - strand, within Psyr_2682at 3256.047 kb on - strand, within Psyr_2682at 3256.088 kb on + strand, within Psyr_2682at 3256.089 kb on - strand, within Psyr_2682at 3256.089 kb on - strand, within Psyr_2682at 3256.096 kb on - strand, within Psyr_2682at 3256.096 kb on - strand, within Psyr_2682at 3256.220 kb on - strand, within Psyr_2682at 3256.235 kb on - strand, within Psyr_2682at 3256.341 kb on + strand, within Psyr_2682at 3256.341 kb on + strand, within Psyr_2682at 3256.341 kb on + strand, within Psyr_2682at 3256.341 kb on + strand, within Psyr_2682at 3256.342 kb on - strand, within Psyr_2682at 3256.342 kb on - strand, within Psyr_2682at 3256.342 kb on - strand, within Psyr_2682at 3256.342 kb on - strand, within Psyr_2682at 3256.342 kb on - strand, within Psyr_2682at 3256.584 kb on + strandat 3256.584 kb on + strandat 3256.585 kb on - strandat 3256.585 kb on - strandat 3256.585 kb on - strandat 3256.666 kb on + strandat 3256.666 kb on + strandat 3256.667 kb on - strandat 3256.667 kb on - strandat 3256.667 kb on - strandat 3256.699 kb on + strandat 3256.699 kb on + strandat 3256.700 kb on - strandat 3256.735 kb on - strandat 3256.735 kb on - strandat 3256.810 kb on - strandat 3256.862 kb on + strandat 3256.862 kb on + strandat 3256.868 kb on + strandat 3256.869 kb on - strandat 3257.041 kb on + strandat 3257.042 kb on - strandat 3257.053 kb on + strandat 3257.053 kb on + strandat 3257.064 kb on - strandat 3257.064 kb on - strandat 3257.066 kb on + strandat 3257.084 kb on + strandat 3257.085 kb on - strandat 3257.085 kb on - strandat 3257.085 kb on - strandat 3257.115 kb on - strandat 3257.296 kb on + strandat 3257.296 kb on + strandat 3257.297 kb on - strandat 3257.297 kb on - strandat 3257.297 kb on - strandat 3257.297 kb on - strandat 3257.403 kb on + strand, within Psyr_2683at 3257.403 kb on + strand, within Psyr_2683at 3257.403 kb on + strand, within Psyr_2683at 3257.403 kb on + strand, within Psyr_2683at 3257.404 kb on - strand, within Psyr_2683at 3257.433 kb on + strand, within Psyr_2683at 3257.433 kb on + strand, within Psyr_2683at 3257.433 kb on + strand, within Psyr_2683at 3257.434 kb on - strand, within Psyr_2683at 3257.434 kb on - strand, within Psyr_2683at 3257.493 kb on + strand, within Psyr_2683at 3257.501 kb on - strand, within Psyr_2683at 3257.636 kb on + strand, within Psyr_2683at 3257.637 kb on - strand, within Psyr_2683

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
remove
3,253,617 - Psyr_2681 0.48 -0.6
3,253,845 - Psyr_2681 0.62 +0.6
3,253,979 + Psyr_2681 0.70 +0.1
3,253,979 + Psyr_2681 0.70 -1.8
3,253,979 + Psyr_2681 0.70 -0.3
3,253,980 - Psyr_2681 0.70 -1.2
3,253,980 - Psyr_2681 0.70 -2.5
3,253,980 - Psyr_2681 0.70 +0.2
3,253,980 - Psyr_2681 0.70 +0.9
3,253,980 - +1.2
3,253,980 - Psyr_2681 0.70 -2.3
3,253,980 - Psyr_2681 0.70 +0.4
3,253,980 - Psyr_2681 0.70 +0.4
3,253,980 - Psyr_2681 0.70 -0.5
3,254,075 + Psyr_2681 0.76 +1.3
3,254,075 + Psyr_2681 0.76 -0.8
3,254,076 - Psyr_2681 0.76 -1.8
3,254,076 - Psyr_2681 0.76 -2.1
3,254,076 - Psyr_2681 0.76 -1.0
3,254,076 - Psyr_2681 0.76 -2.5
3,254,076 - Psyr_2681 0.76 -0.4
3,254,104 + Psyr_2681 0.78 -2.2
3,254,399 - +1.0
3,254,420 + +1.2
3,254,420 + -0.5
3,254,421 - -0.0
3,254,465 + -0.8
3,254,466 - +1.1
3,254,466 - -1.8
3,254,564 + +0.4
3,254,565 - -0.5
3,254,721 + -2.0
3,254,722 - -0.1
3,254,722 - +1.6
3,254,722 - +4.0
3,254,722 - +0.9
3,254,824 + Psyr_2682 0.14 -0.2
3,254,824 + Psyr_2682 0.14 +0.3
3,254,824 + Psyr_2682 0.14 -0.4
3,254,825 - Psyr_2682 0.14 +0.8
3,254,825 - Psyr_2682 0.14 +0.5
3,254,891 + Psyr_2682 0.17 +0.8
3,254,891 + Psyr_2682 0.17 +0.2
3,254,891 + Psyr_2682 0.17 -0.0
3,254,891 + Psyr_2682 0.17 -1.4
3,254,892 - Psyr_2682 0.17 -2.3
3,254,892 - Psyr_2682 0.17 +0.2
3,254,892 - Psyr_2682 0.17 -1.7
3,254,892 - Psyr_2682 0.17 -2.4
3,254,989 + Psyr_2682 0.21 -0.3
3,254,989 + Psyr_2682 0.21 -0.2
3,254,990 - Psyr_2682 0.21 -1.2
3,254,990 - Psyr_2682 0.21 -0.3
3,255,034 + Psyr_2682 0.23 -0.1
3,255,058 + Psyr_2682 0.24 -2.4
3,255,058 + Psyr_2682 0.24 -0.7
3,255,058 + Psyr_2682 0.24 -0.9
3,255,442 + Psyr_2682 0.42 -1.2
3,255,462 - Psyr_2682 0.43 +1.2
3,255,523 + Psyr_2682 0.46 -1.1
3,255,638 - Psyr_2682 0.51 -0.2
3,255,638 - Psyr_2682 0.51 +1.5
3,255,638 - Psyr_2682 0.51 +0.6
3,255,640 + Psyr_2682 0.51 -2.0
3,255,640 + Psyr_2682 0.51 -2.3
3,255,640 + Psyr_2682 0.51 +1.4
3,255,641 - Psyr_2682 0.51 -2.1
3,255,641 - Psyr_2682 0.51 +0.2
3,255,641 - Psyr_2682 0.51 +0.2
3,255,641 - Psyr_2682 0.51 -0.4
3,255,641 - Psyr_2682 0.51 +1.0
3,255,643 + Psyr_2682 0.51 -0.9
3,255,643 + Psyr_2682 0.51 -0.1
3,255,662 + Psyr_2682 0.52 -3.1
3,255,662 + Psyr_2682 0.52 -1.8
3,255,663 - +1.6
3,255,763 + Psyr_2682 0.57 +2.4
3,255,763 + Psyr_2682 0.57 -0.4
3,255,763 + Psyr_2682 0.57 +0.3
3,255,763 + Psyr_2682 0.57 -2.1
3,255,763 + Psyr_2682 0.57 -2.0
3,255,763 + Psyr_2682 0.57 +1.0
3,255,763 + Psyr_2682 0.57 -3.1
3,255,763 + Psyr_2682 0.57 +1.2
3,255,764 - Psyr_2682 0.57 +0.8
3,255,764 - Psyr_2682 0.57 -1.0
3,255,764 - Psyr_2682 0.57 +1.8
3,255,764 - Psyr_2682 0.57 -0.5
3,255,764 - Psyr_2682 0.57 +0.2
3,255,764 - Psyr_2682 0.57 -0.4
3,255,767 + Psyr_2682 0.57 -0.3
3,255,767 + Psyr_2682 0.57 +1.4
3,255,768 - Psyr_2682 0.57 -3.0
3,255,768 - Psyr_2682 0.57 -3.4
3,255,768 - Psyr_2682 0.57 +1.6
3,255,768 - Psyr_2682 0.57 +0.1
3,255,797 + Psyr_2682 0.58 -0.4
3,255,798 - Psyr_2682 0.58 +1.2
3,255,798 - Psyr_2682 0.58 +1.4
3,256,027 - Psyr_2682 0.69 -0.0
3,256,044 - Psyr_2682 0.70 -1.6
3,256,046 + Psyr_2682 0.70 -1.0
3,256,047 - Psyr_2682 0.70 -3.1
3,256,047 - Psyr_2682 0.70 +4.0
3,256,088 + Psyr_2682 0.72 -1.0
3,256,089 - Psyr_2682 0.72 -2.5
3,256,089 - Psyr_2682 0.72 -1.6
3,256,096 - Psyr_2682 0.72 +1.2
3,256,096 - Psyr_2682 0.72 +1.0
3,256,220 - Psyr_2682 0.78 +0.1
3,256,235 - Psyr_2682 0.79 -0.4
3,256,341 + Psyr_2682 0.83 +1.5
3,256,341 + Psyr_2682 0.83 -0.7
3,256,341 + Psyr_2682 0.83 -0.2
3,256,341 + Psyr_2682 0.83 -1.2
3,256,342 - Psyr_2682 0.84 +0.7
3,256,342 - Psyr_2682 0.84 -1.2
3,256,342 - Psyr_2682 0.84 +0.9
3,256,342 - Psyr_2682 0.84 -1.8
3,256,342 - Psyr_2682 0.84 +2.3
3,256,584 + -0.3
3,256,584 + -1.7
3,256,585 - -1.0
3,256,585 - -0.7
3,256,585 - +0.0
3,256,666 + +0.8
3,256,666 + -0.4
3,256,667 - -0.8
3,256,667 - -0.7
3,256,667 - +0.4
3,256,699 + -0.7
3,256,699 + -0.3
3,256,700 - -1.3
3,256,735 - +1.3
3,256,735 - +0.4
3,256,810 - -2.9
3,256,862 + +0.6
3,256,862 + -1.5
3,256,868 + -0.9
3,256,869 - -0.2
3,257,041 + +3.2
3,257,042 - -2.5
3,257,053 + -2.1
3,257,053 + -0.4
3,257,064 - -0.4
3,257,064 - -1.4
3,257,066 + -0.5
3,257,084 + -2.0
3,257,085 - -1.1
3,257,085 - -1.1
3,257,085 - +0.4
3,257,115 - -2.5
3,257,296 + +0.4
3,257,296 + -0.0
3,257,297 - -2.1
3,257,297 - -2.5
3,257,297 - -2.0
3,257,297 - -2.4
3,257,403 + Psyr_2683 0.16 +1.4
3,257,403 + Psyr_2683 0.16 -2.5
3,257,403 + Psyr_2683 0.16 -1.4
3,257,403 + Psyr_2683 0.16 +1.0
3,257,404 - Psyr_2683 0.16 -0.5
3,257,433 + Psyr_2683 0.18 +0.2
3,257,433 + Psyr_2683 0.18 +2.5
3,257,433 + Psyr_2683 0.18 -1.8
3,257,434 - Psyr_2683 0.18 +0.0
3,257,434 - Psyr_2683 0.18 -2.3
3,257,493 + Psyr_2683 0.22 -3.3
3,257,501 - Psyr_2683 0.22 +1.4
3,257,636 + Psyr_2683 0.32 -0.3
3,257,637 - Psyr_2683 0.32 -3.7

Or see this region's nucleotide sequence