Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2018

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
2,341,722	+		Psyr_2017	0.59	+1.3
2,341,723	-		Psyr_2017	0.59	-2.4
2,341,723	-		Psyr_2017	0.59	+0.5
2,341,723	-		Psyr_2017	0.59	+1.2
2,341,903	-		Psyr_2017	0.69	-2.4
2,341,905	+		Psyr_2017	0.69	+0.8
2,341,906	-		Psyr_2017	0.69	+0.5
2,341,924	-		Psyr_2017	0.70	-2.1
2,342,023	-		Psyr_2017	0.75	-2.8
2,342,312	+				+0.3
2,342,313	-				-1.7
2,342,313	-				-1.1
2,342,454	+				+0.4
2,342,483	-				+0.7
2,342,483	-				-3.4
2,342,643	+				+1.7
2,342,644	-				-2.7
2,342,644	-				-1.0
2,342,644	-				-2.6
2,342,660	-				-0.4
2,342,661	+				-1.9
2,342,662	-		Psyr_2018	0.10	-1.4
2,342,662	-		Psyr_2018	0.10	-1.5
2,342,662	-		Psyr_2018	0.10	+0.2
2,342,794	-		Psyr_2018	0.28	-2.0
2,342,816	+		Psyr_2018	0.31	-2.6
2,342,935	+		Psyr_2018	0.47	-2.1
2,342,935	+		Psyr_2018	0.47	+0.7
2,342,935	+		Psyr_2018	0.47	-1.1
2,342,936	-		Psyr_2018	0.48	+1.5
2,342,936	-		Psyr_2018	0.48	-2.3
2,343,181	+		Psyr_2018	0.81	-0.5
2,343,181	+		Psyr_2018	0.81	-1.4
2,343,181	+		Psyr_2018	0.81	-0.1
2,343,181	+		Psyr_2018	0.81	-1.5
2,343,181	+		Psyr_2018	0.81	+0.9
2,343,182	-		Psyr_2018	0.81	+1.9
2,343,182	-		Psyr_2018	0.81	-1.0
2,343,182	-		Psyr_2018	0.81	+0.9
2,343,182	-		Psyr_2018	0.81	-1.2
2,343,182	-		Psyr_2018	0.81	+0.3
2,343,183	+		Psyr_2018	0.81	-0.1
2,343,183	+		Psyr_2018	0.81	+0.9
2,343,184	-		Psyr_2018	0.82	-2.1
2,343,184	-		Psyr_2018	0.82	-2.1
2,343,184	-		Psyr_2018	0.82	-1.1
2,343,189	+		Psyr_2018	0.82	-1.1
2,343,190	-		Psyr_2018	0.82	-1.2
2,343,249	+				+1.5
2,343,249	+				-1.4
2,343,249	+				-3.2
2,343,249	+				+0.3
2,343,249	+				-0.7
2,343,249	+				+0.3
2,343,249	+				-1.6
2,343,249	+				-1.6
2,343,249	+				+0.4
2,343,250	-				+0.3
2,343,250	-				-1.7
2,343,250	-				-0.8
2,343,250	-				-1.8
2,343,750	-				-0.7
2,343,750	-				-0.8
2,343,750	-				-1.9
2,343,753	+				-1.5
2,343,753	+				+0.0
2,343,753	+				+0.1
2,343,753	+				+0.3
2,343,754	-				-0.4
2,343,754	-				-3.7
2,343,754	-				-1.8
2,343,768	+				-0.3
2,343,769	-				-0.6
2,343,769	-				-0.9
2,343,836	+				-1.4
2,343,839	+				-0.1
2,343,840	-				+1.2
2,343,840	-				-0.7
2,343,840	-				+0.9