Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1898

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1897 and Psyr_1898 are separated by 146 nucleotidesPsyr_1898 and Psyr_1899 are separated by 64 nucleotides Psyr_1897: Psyr_1897 - Glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,170,617 to 2,172,080 _1897 Psyr_1898: Psyr_1898 - Major facilitator superfamily, at 2,172,227 to 2,173,489 _1898 Psyr_1899: Psyr_1899 - General substrate transporter:Major facilitator superfamily, at 2,173,554 to 2,174,846 _1899 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2171.274 kb on + strandat 2171.832 kb on + strand, within Psyr_1897at 2171.986 kb on - strandat 2171.986 kb on - strandat 2171.986 kb on - strandat 2172.219 kb on + strandat 2172.333 kb on - strandat 2172.363 kb on - strand, within Psyr_1898at 2172.363 kb on - strand, within Psyr_1898at 2172.426 kb on - strand, within Psyr_1898at 2172.545 kb on - strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.726 kb on + strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.727 kb on - strand, within Psyr_1898at 2172.807 kb on + strand, within Psyr_1898at 2172.808 kb on - strand, within Psyr_1898at 2172.808 kb on - strand, within Psyr_1898at 2172.808 kb on - strand, within Psyr_1898at 2172.808 kb on - strand, within Psyr_1898at 2172.808 kb on - strand, within Psyr_1898at 2172.815 kb on - strand, within Psyr_1898at 2172.859 kb on + strand, within Psyr_1898at 2172.860 kb on - strand, within Psyr_1898at 2172.860 kb on - strand, within Psyr_1898at 2172.917 kb on + strand, within Psyr_1898at 2172.917 kb on + strand, within Psyr_1898at 2172.918 kb on - strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.941 kb on + strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strandat 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.942 kb on - strand, within Psyr_1898at 2172.985 kb on + strand, within Psyr_1898at 2173.082 kb on + strandat 2173.130 kb on - strand, within Psyr_1898at 2173.188 kb on - strand, within Psyr_1898at 2173.238 kb on + strand, within Psyr_1898at 2173.238 kb on + strand, within Psyr_1898at 2173.238 kb on + strand, within Psyr_1898at 2173.239 kb on - strand, within Psyr_1898at 2173.239 kb on - strand, within Psyr_1898at 2173.350 kb on + strand, within Psyr_1898at 2173.350 kb on + strand, within Psyr_1898at 2173.350 kb on + strand, within Psyr_1898at 2173.351 kb on - strand, within Psyr_1898at 2173.354 kb on + strand, within Psyr_1898at 2173.354 kb on + strand, within Psyr_1898at 2173.354 kb on + strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.355 kb on - strand, within Psyr_1898at 2173.400 kb on + strandat 2173.401 kb on - strandat 2173.658 kb on + strandat 2173.658 kb on + strandat 2173.659 kb on - strandat 2173.659 kb on - strandat 2173.684 kb on - strand, within Psyr_1899at 2173.696 kb on + strand, within Psyr_1899at 2173.700 kb on + strand, within Psyr_1899at 2173.701 kb on - strand, within Psyr_1899at 2173.701 kb on - strand, within Psyr_1899at 2173.701 kb on - strand, within Psyr_1899at 2173.747 kb on + strand, within Psyr_1899at 2173.748 kb on - strand, within Psyr_1899at 2173.822 kb on + strand, within Psyr_1899at 2173.823 kb on - strand, within Psyr_1899at 2173.823 kb on - strand, within Psyr_1899at 2173.909 kb on + strand, within Psyr_1899at 2174.087 kb on - strand, within Psyr_1899at 2174.087 kb on - strand, within Psyr_1899at 2174.444 kb on - strand, within Psyr_1899

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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2,171,274 + -0.3
2,171,832 + Psyr_1897 0.83 +1.0
2,171,986 - +0.7
2,171,986 - +0.5
2,171,986 - +0.4
2,172,219 + -4.0
2,172,333 - -0.0
2,172,363 - Psyr_1898 0.11 +0.5
2,172,363 - Psyr_1898 0.11 -0.1
2,172,426 - Psyr_1898 0.16 +1.5
2,172,545 - Psyr_1898 0.25 -0.8
2,172,726 + Psyr_1898 0.40 +0.2
2,172,726 + Psyr_1898 0.40 +0.9
2,172,726 + Psyr_1898 0.40 -1.0
2,172,726 + Psyr_1898 0.40 +0.0
2,172,726 + Psyr_1898 0.40 -0.4
2,172,726 + Psyr_1898 0.40 +1.2
2,172,726 + Psyr_1898 0.40 -0.5
2,172,726 + Psyr_1898 0.40 -0.7
2,172,727 - Psyr_1898 0.40 -0.1
2,172,727 - Psyr_1898 0.40 +1.6
2,172,727 - Psyr_1898 0.40 -0.1
2,172,727 - Psyr_1898 0.40 +0.6
2,172,727 - Psyr_1898 0.40 +0.3
2,172,727 - Psyr_1898 0.40 +1.1
2,172,727 - Psyr_1898 0.40 -0.8
2,172,807 + Psyr_1898 0.46 +1.0
2,172,808 - Psyr_1898 0.46 +1.2
2,172,808 - Psyr_1898 0.46 +0.0
2,172,808 - Psyr_1898 0.46 -0.1
2,172,808 - Psyr_1898 0.46 -1.7
2,172,808 - Psyr_1898 0.46 -0.3
2,172,815 - Psyr_1898 0.47 +2.5
2,172,859 + Psyr_1898 0.50 -3.0
2,172,860 - Psyr_1898 0.50 -0.3
2,172,860 - Psyr_1898 0.50 -0.3
2,172,917 + Psyr_1898 0.55 +0.9
2,172,917 + Psyr_1898 0.55 +2.5
2,172,918 - Psyr_1898 0.55 -0.4
2,172,941 + Psyr_1898 0.57 -1.1
2,172,941 + Psyr_1898 0.57 -1.3
2,172,941 + Psyr_1898 0.57 -1.0
2,172,941 + Psyr_1898 0.57 -1.0
2,172,941 + Psyr_1898 0.57 -0.6
2,172,941 + Psyr_1898 0.57 -3.1
2,172,941 + Psyr_1898 0.57 -1.4
2,172,941 + Psyr_1898 0.57 +0.7
2,172,941 + Psyr_1898 0.57 +0.5
2,172,941 + Psyr_1898 0.57 +0.2
2,172,941 + Psyr_1898 0.57 +0.7
2,172,941 + Psyr_1898 0.57 -0.3
2,172,941 + Psyr_1898 0.57 +1.7
2,172,941 + Psyr_1898 0.57 -2.2
2,172,941 + Psyr_1898 0.57 +1.1
2,172,941 + Psyr_1898 0.57 +0.6
2,172,942 - Psyr_1898 0.57 +0.3
2,172,942 - Psyr_1898 0.57 -1.7
2,172,942 - Psyr_1898 0.57 +0.7
2,172,942 - Psyr_1898 0.57 -0.6
2,172,942 - Psyr_1898 0.57 -2.3
2,172,942 - Psyr_1898 0.57 -1.3
2,172,942 - Psyr_1898 0.57 -1.5
2,172,942 - Psyr_1898 0.57 +0.7
2,172,942 - +1.7
2,172,942 - Psyr_1898 0.57 -3.3
2,172,942 - Psyr_1898 0.57 -2.6
2,172,942 - Psyr_1898 0.57 -0.7
2,172,942 - Psyr_1898 0.57 -0.5
2,172,942 - Psyr_1898 0.57 -1.2
2,172,942 - Psyr_1898 0.57 +0.5
2,172,942 - Psyr_1898 0.57 -2.2
2,172,942 - Psyr_1898 0.57 -0.3
2,172,942 - Psyr_1898 0.57 -1.6
2,172,942 - Psyr_1898 0.57 -2.1
2,172,942 - Psyr_1898 0.57 +1.1
2,172,942 - Psyr_1898 0.57 -3.0
2,172,942 - Psyr_1898 0.57 +1.7
2,172,942 - Psyr_1898 0.57 -3.0
2,172,985 + Psyr_1898 0.60 -2.6
2,173,082 + +3.5
2,173,130 - Psyr_1898 0.71 -0.6
2,173,188 - Psyr_1898 0.76 +0.3
2,173,238 + Psyr_1898 0.80 +1.2
2,173,238 + Psyr_1898 0.80 +3.3
2,173,238 + Psyr_1898 0.80 -0.4
2,173,239 - Psyr_1898 0.80 -1.1
2,173,239 - Psyr_1898 0.80 -0.5
2,173,350 + Psyr_1898 0.89 +0.0
2,173,350 + Psyr_1898 0.89 +0.5
2,173,350 + Psyr_1898 0.89 +0.4
2,173,351 - Psyr_1898 0.89 -0.4
2,173,354 + Psyr_1898 0.89 +0.7
2,173,354 + Psyr_1898 0.89 +0.1
2,173,354 + Psyr_1898 0.89 -0.7
2,173,355 - Psyr_1898 0.89 -2.7
2,173,355 - Psyr_1898 0.89 -0.5
2,173,355 - Psyr_1898 0.89 +0.7
2,173,355 - Psyr_1898 0.89 -3.8
2,173,355 - Psyr_1898 0.89 -1.7
2,173,355 - Psyr_1898 0.89 +4.2
2,173,400 + -1.7
2,173,401 - -1.8
2,173,658 + +0.0
2,173,658 + -0.7
2,173,659 - +1.4
2,173,659 - +1.1
2,173,684 - Psyr_1899 0.10 +0.6
2,173,696 + Psyr_1899 0.11 +0.3
2,173,700 + Psyr_1899 0.11 -0.6
2,173,701 - Psyr_1899 0.11 +2.2
2,173,701 - Psyr_1899 0.11 -1.8
2,173,701 - Psyr_1899 0.11 -1.0
2,173,747 + Psyr_1899 0.15 -2.4
2,173,748 - Psyr_1899 0.15 +2.1
2,173,822 + Psyr_1899 0.21 -0.2
2,173,823 - Psyr_1899 0.21 -1.2
2,173,823 - Psyr_1899 0.21 +0.8
2,173,909 + Psyr_1899 0.27 -0.1
2,174,087 - Psyr_1899 0.41 +2.3
2,174,087 - Psyr_1899 0.41 -1.2
2,174,444 - Psyr_1899 0.69 +0.2

Or see this region's nucleotide sequence