Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1822

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1821 and Psyr_1822 are separated by 657 nucleotidesPsyr_1822 and Psyr_1823 are separated by 5 nucleotides Psyr_1821: Psyr_1821 - GCN5-related N-acetyltransferase, at 2,100,895 to 2,101,383 _1821 Psyr_1822: Psyr_1822 - MscS Mechanosensitive ion channel, at 2,102,041 to 2,103,165 _1822 Psyr_1823: Psyr_1823 - Twin-arginine translocation pathway signal, at 2,103,171 to 2,104,856 _1823 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2101.263 kb on + strand, within Psyr_1821at 2101.277 kb on + strand, within Psyr_1821at 2101.278 kb on - strand, within Psyr_1821at 2101.278 kb on - strand, within Psyr_1821at 2101.297 kb on + strand, within Psyr_1821at 2101.297 kb on + strand, within Psyr_1821at 2101.298 kb on - strand, within Psyr_1821at 2101.298 kb on - strand, within Psyr_1821at 2101.298 kb on - strand, within Psyr_1821at 2101.298 kb on - strand, within Psyr_1821at 2101.312 kb on - strand, within Psyr_1821at 2101.764 kb on - strandat 2101.773 kb on + strandat 2101.812 kb on + strandat 2101.812 kb on + strandat 2101.812 kb on + strandat 2101.812 kb on + strandat 2101.813 kb on - strandat 2101.873 kb on - strandat 2101.873 kb on - strandat 2101.873 kb on - strandat 2101.930 kb on - strandat 2102.219 kb on - strand, within Psyr_1822at 2102.219 kb on - strand, within Psyr_1822at 2102.219 kb on - strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.250 kb on + strand, within Psyr_1822at 2102.251 kb on - strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.253 kb on + strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.254 kb on - strand, within Psyr_1822at 2102.408 kb on - strand, within Psyr_1822at 2102.535 kb on + strand, within Psyr_1822at 2102.535 kb on + strand, within Psyr_1822at 2102.536 kb on - strand, within Psyr_1822at 2102.791 kb on + strand, within Psyr_1822at 2102.792 kb on - strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.839 kb on + strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.840 kb on - strand, within Psyr_1822at 2102.862 kb on - strand, within Psyr_1822at 2102.995 kb on + strand, within Psyr_1822at 2102.996 kb on - strand, within Psyr_1822at 2102.996 kb on - strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.004 kb on + strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.005 kb on - strand, within Psyr_1822at 2103.006 kb on + strand, within Psyr_1822at 2103.094 kb on + strandat 2103.095 kb on - strandat 2103.117 kb on + strandat 2103.577 kb on + strand, within Psyr_1823at 2103.577 kb on + strand, within Psyr_1823at 2103.577 kb on + strand, within Psyr_1823at 2103.577 kb on + strand, within Psyr_1823at 2103.577 kb on + strand, within Psyr_1823at 2103.578 kb on - strand, within Psyr_1823at 2103.712 kb on + strand, within Psyr_1823at 2103.712 kb on + strand, within Psyr_1823at 2103.713 kb on - strand, within Psyr_1823at 2103.734 kb on - strand, within Psyr_1823at 2103.967 kb on + strand, within Psyr_1823at 2103.968 kb on - strand, within Psyr_1823at 2103.968 kb on - strand, within Psyr_1823at 2103.968 kb on - strand, within Psyr_1823

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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2,101,263 + Psyr_1821 0.75 +0.5
2,101,277 + Psyr_1821 0.78 -0.2
2,101,278 - Psyr_1821 0.78 -0.4
2,101,278 - Psyr_1821 0.78 +0.5
2,101,297 + Psyr_1821 0.82 +0.4
2,101,297 + Psyr_1821 0.82 +0.1
2,101,298 - Psyr_1821 0.82 -2.3
2,101,298 - Psyr_1821 0.82 +0.3
2,101,298 - Psyr_1821 0.82 +0.1
2,101,298 - Psyr_1821 0.82 +0.7
2,101,312 - Psyr_1821 0.85 +1.9
2,101,764 - -0.5
2,101,773 + -2.5
2,101,812 + -1.0
2,101,812 + -0.8
2,101,812 + +0.5
2,101,812 + +2.1
2,101,813 - -0.5
2,101,873 - +0.5
2,101,873 - +3.5
2,101,873 - -0.2
2,101,930 - +1.5
2,102,219 - Psyr_1822 0.16 -0.2
2,102,219 - Psyr_1822 0.16 +1.0
2,102,219 - Psyr_1822 0.16 -0.2
2,102,250 + Psyr_1822 0.19 -1.3
2,102,250 + Psyr_1822 0.19 -1.2
2,102,250 + Psyr_1822 0.19 -0.4
2,102,251 - Psyr_1822 0.19 +0.5
2,102,253 + Psyr_1822 0.19 +0.5
2,102,253 + Psyr_1822 0.19 +0.3
2,102,254 - Psyr_1822 0.19 +0.3
2,102,254 - Psyr_1822 0.19 +1.0
2,102,254 - Psyr_1822 0.19 +0.4
2,102,254 - Psyr_1822 0.19 -1.3
2,102,254 - Psyr_1822 0.19 +0.3
2,102,254 - Psyr_1822 0.19 +1.1
2,102,254 - Psyr_1822 0.19 -1.5
2,102,408 - Psyr_1822 0.33 -2.6
2,102,535 + Psyr_1822 0.44 +3.7
2,102,535 + Psyr_1822 0.44 +1.3
2,102,536 - Psyr_1822 0.44 +0.0
2,102,791 + Psyr_1822 0.67 +0.1
2,102,792 - Psyr_1822 0.67 +0.8
2,102,839 + Psyr_1822 0.71 +0.3
2,102,839 + Psyr_1822 0.71 +0.8
2,102,839 + Psyr_1822 0.71 +1.3
2,102,839 + Psyr_1822 0.71 -0.8
2,102,839 + Psyr_1822 0.71 +0.8
2,102,839 + Psyr_1822 0.71 +1.6
2,102,839 + Psyr_1822 0.71 -0.8
2,102,840 - Psyr_1822 0.71 +0.9
2,102,840 - Psyr_1822 0.71 +0.5
2,102,840 - Psyr_1822 0.71 +0.3
2,102,840 - Psyr_1822 0.71 +0.7
2,102,862 - Psyr_1822 0.73 -0.4
2,102,995 + Psyr_1822 0.85 +0.5
2,102,996 - Psyr_1822 0.85 -0.5
2,102,996 - Psyr_1822 0.85 +1.3
2,103,004 + Psyr_1822 0.86 -1.1
2,103,004 + Psyr_1822 0.86 +0.2
2,103,004 + Psyr_1822 0.86 +0.5
2,103,004 + Psyr_1822 0.86 +1.5
2,103,004 + Psyr_1822 0.86 +2.4
2,103,004 + Psyr_1822 0.86 +0.7
2,103,004 + Psyr_1822 0.86 +0.7
2,103,004 + Psyr_1822 0.86 +0.6
2,103,004 + Psyr_1822 0.86 +1.0
2,103,005 - Psyr_1822 0.86 +0.9
2,103,005 - Psyr_1822 0.86 +0.2
2,103,005 - Psyr_1822 0.86 -2.7
2,103,005 - Psyr_1822 0.86 -0.3
2,103,005 - Psyr_1822 0.86 +2.3
2,103,006 + Psyr_1822 0.86 +0.3
2,103,094 + -0.1
2,103,095 - +0.8
2,103,117 + +0.4
2,103,577 + Psyr_1823 0.24 +0.8
2,103,577 + Psyr_1823 0.24 +0.0
2,103,577 + Psyr_1823 0.24 -1.5
2,103,577 + Psyr_1823 0.24 +1.0
2,103,577 + Psyr_1823 0.24 -0.2
2,103,578 - Psyr_1823 0.24 +1.7
2,103,712 + Psyr_1823 0.32 -2.6
2,103,712 + Psyr_1823 0.32 -1.6
2,103,713 - Psyr_1823 0.32 +1.9
2,103,734 - Psyr_1823 0.33 +1.0
2,103,967 + Psyr_1823 0.47 +0.7
2,103,968 - Psyr_1823 0.47 +0.1
2,103,968 - Psyr_1823 0.47 +0.7
2,103,968 - Psyr_1823 0.47 +0.1

Or see this region's nucleotide sequence