Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1280

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1279 and Psyr_1280 are separated by 12 nucleotidesPsyr_1280 and Psyr_1281 are separated by 171 nucleotides Psyr_1279: Psyr_1279 - CBS:Transporter-associated region, at 1,445,063 to 1,446,310 _1279 Psyr_1280: Psyr_1280 - Cytochrome c assembly protein, at 1,446,323 to 1,447,177 _1280 Psyr_1281: Psyr_1281 - signal recognition particle subunit FFH/SRP54 (srp54), at 1,447,349 to 1,448,725 _1281 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1445.381 kb on - strand, within Psyr_1279at 1445.416 kb on - strand, within Psyr_1279at 1445.502 kb on + strand, within Psyr_1279at 1445.503 kb on - strand, within Psyr_1279at 1445.503 kb on - strand, within Psyr_1279at 1445.512 kb on - strand, within Psyr_1279at 1445.579 kb on - strand, within Psyr_1279at 1445.595 kb on - strand, within Psyr_1279at 1445.595 kb on - strand, within Psyr_1279at 1445.595 kb on - strand, within Psyr_1279at 1445.606 kb on - strand, within Psyr_1279at 1445.606 kb on - strand, within Psyr_1279at 1445.616 kb on + strand, within Psyr_1279at 1445.617 kb on - strand, within Psyr_1279at 1445.781 kb on + strand, within Psyr_1279at 1445.782 kb on - strand, within Psyr_1279at 1445.904 kb on + strand, within Psyr_1279at 1445.905 kb on - strand, within Psyr_1279at 1445.905 kb on - strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.003 kb on + strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.004 kb on - strand, within Psyr_1279at 1446.063 kb on + strand, within Psyr_1279at 1446.064 kb on - strand, within Psyr_1279at 1446.064 kb on - strand, within Psyr_1279at 1446.064 kb on - strand, within Psyr_1279at 1446.072 kb on + strand, within Psyr_1279at 1446.072 kb on + strand, within Psyr_1279at 1446.110 kb on + strand, within Psyr_1279at 1446.110 kb on + strand, within Psyr_1279at 1446.111 kb on - strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.124 kb on + strand, within Psyr_1279at 1446.125 kb on - strand, within Psyr_1279at 1446.125 kb on - strand, within Psyr_1279at 1446.125 kb on - strand, within Psyr_1279at 1446.266 kb on + strandat 1446.367 kb on - strandat 1446.468 kb on - strand, within Psyr_1280at 1446.709 kb on + strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.177 kb on + strandat 1447.178 kb on - strandat 1447.246 kb on + strandat 1447.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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1,445,381 - Psyr_1279 0.25 +0.3
1,445,416 - Psyr_1279 0.28 -1.9
1,445,502 + Psyr_1279 0.35 -0.6
1,445,503 - Psyr_1279 0.35 -0.5
1,445,503 - Psyr_1279 0.35 -1.6
1,445,512 - Psyr_1279 0.36 -0.9
1,445,579 - Psyr_1279 0.41 -1.3
1,445,595 - Psyr_1279 0.43 -2.5
1,445,595 - Psyr_1279 0.43 -2.5
1,445,595 - Psyr_1279 0.43 -1.0
1,445,606 - Psyr_1279 0.44 -3.5
1,445,606 - Psyr_1279 0.44 -2.0
1,445,616 + Psyr_1279 0.44 -0.4
1,445,617 - Psyr_1279 0.44 -1.1
1,445,781 + Psyr_1279 0.58 +0.1
1,445,782 - Psyr_1279 0.58 +0.9
1,445,904 + Psyr_1279 0.67 +0.6
1,445,905 - Psyr_1279 0.67 -1.9
1,445,905 - Psyr_1279 0.67 +0.5
1,446,003 + Psyr_1279 0.75 +3.2
1,446,003 + Psyr_1279 0.75 -1.3
1,446,003 + Psyr_1279 0.75 +1.2
1,446,003 + Psyr_1279 0.75 -1.6
1,446,004 - Psyr_1279 0.75 +0.2
1,446,004 - Psyr_1279 0.75 +0.2
1,446,004 - Psyr_1279 0.75 +0.5
1,446,004 - Psyr_1279 0.75 +0.7
1,446,004 - Psyr_1279 0.75 +0.2
1,446,004 - Psyr_1279 0.75 -0.3
1,446,004 - Psyr_1279 0.75 -1.3
1,446,004 - Psyr_1279 0.75 -0.3
1,446,063 + Psyr_1279 0.80 -0.2
1,446,064 - Psyr_1279 0.80 -0.9
1,446,064 - Psyr_1279 0.80 -1.1
1,446,064 - Psyr_1279 0.80 -1.3
1,446,072 + Psyr_1279 0.81 -0.3
1,446,072 + Psyr_1279 0.81 +0.5
1,446,110 + Psyr_1279 0.84 -2.8
1,446,110 + Psyr_1279 0.84 +0.2
1,446,111 - Psyr_1279 0.84 -2.4
1,446,124 + Psyr_1279 0.85 -0.5
1,446,124 + Psyr_1279 0.85 -1.2
1,446,125 - Psyr_1279 0.85 +0.4
1,446,125 - Psyr_1279 0.85 -1.2
1,446,125 - Psyr_1279 0.85 -2.1
1,446,266 + -0.5
1,446,367 - +1.7
1,446,468 - Psyr_1280 0.17 +1.1
1,446,709 + Psyr_1280 0.45 -4.3
1,446,813 - Psyr_1280 0.57 -1.5
1,447,083 + Psyr_1280 0.89 -0.5
1,447,083 + Psyr_1280 0.89 -1.1
1,447,083 + Psyr_1280 0.89 -1.2
1,447,083 + Psyr_1280 0.89 -0.9
1,447,084 - Psyr_1280 0.89 -0.5
1,447,084 - Psyr_1280 0.89 -0.1
1,447,084 - Psyr_1280 0.89 -1.1
1,447,084 - Psyr_1280 0.89 -1.1
1,447,084 - Psyr_1280 0.89 -1.5
1,447,135 + -2.4
1,447,135 + -1.2
1,447,135 + -2.6
1,447,135 + -0.8
1,447,135 + -0.3
1,447,135 + -0.5
1,447,135 + -0.6
1,447,135 + -0.6
1,447,135 + -2.1
1,447,136 - +1.7
1,447,136 - +0.7
1,447,136 - -2.4
1,447,136 - -0.2
1,447,136 - -1.1
1,447,136 - -0.8
1,447,136 - -0.9
1,447,136 - -1.3
1,447,136 - +0.5
1,447,136 - +0.8
1,447,136 - +1.5
1,447,136 - -1.4
1,447,177 + -1.2
1,447,178 - -0.7
1,447,246 + -2.1
1,447,246 + -0.5

Or see this region's nucleotide sequence