Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1090

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
1,231,196	-		Psyr_1088	0.33	+0.2
1,231,219	+		Psyr_1088	0.36	+0.7
1,231,222	+		Psyr_1088	0.37	+0.3
1,231,222	+		Psyr_1088	0.37	+0.7
1,231,222	+		Psyr_1088	0.37	+0.1
1,231,222	+		Psyr_1088	0.37	-0.4
1,231,222	+		Psyr_1088	0.37	+0.2
1,231,222	+		Psyr_1088	0.37	-0.3
1,231,223	-		Psyr_1088	0.37	+1.0
1,231,223	-		Psyr_1088	0.37	-0.5
1,231,223	-		Psyr_1088	0.37	+0.4
1,231,223	-		Psyr_1088	0.37	-2.4
1,231,223	-		Psyr_1088	0.37	-0.7
1,231,223	-		Psyr_1088	0.37	-0.7
1,231,252	-		Psyr_1088	0.41	-1.0
1,231,252	-		Psyr_1088	0.41	+0.2
1,231,263	+		Psyr_1088	0.42	+0.2
1,231,263	+		Psyr_1088	0.42	-1.9
1,231,263	+		Psyr_1088	0.42	-0.0
1,231,263	+		Psyr_1088	0.42	-0.9
1,231,268	-		Psyr_1088	0.43	-0.2
1,231,278	+		Psyr_1088	0.44	-1.2
1,231,299	+		Psyr_1088	0.47	+0.0
1,231,300	-		Psyr_1088	0.47	+1.0
1,231,300	-		Psyr_1088	0.47	-1.1
1,231,323	+		Psyr_1088	0.51	+1.6
1,231,324	-		Psyr_1088	0.51	-0.4
1,231,324	-		Psyr_1088	0.51	+0.1
1,231,353	+		Psyr_1088	0.55	-0.1
1,231,353	+		Psyr_1088	0.55	-0.4
1,231,353	+		Psyr_1088	0.55	+0.8
1,231,353	+		Psyr_1088	0.55	+0.5
1,231,354	-		Psyr_1088	0.55	-1.8
1,231,354	-		Psyr_1088	0.55	+0.0
1,231,520	-		Psyr_1088	0.77	-1.2
1,231,522	+		Psyr_1088	0.78	-0.3
1,231,523	-		Psyr_1088	0.78	+0.7
1,231,564	+				+2.3
1,231,564	+		Psyr_1088	0.83	+1.8
1,231,565	-		Psyr_1088	0.84	-4.6
1,231,565	-		Psyr_1088	0.84	+2.0
1,231,570	+		Psyr_1088	0.84	+0.9
1,231,570	+		Psyr_1088	0.84	-0.5
1,231,570	+		Psyr_1088	0.84	-1.4
1,231,570	+		Psyr_1088	0.84	-0.6
1,231,570	+		Psyr_1088	0.84	+0.1
1,231,570	+		Psyr_1088	0.84	+0.4
1,231,570	+		Psyr_1088	0.84	+1.1
1,231,571	-		Psyr_1088	0.84	+3.0
1,231,571	-		Psyr_1088	0.84	-3.9
1,231,657	+				+0.7
1,231,675	+				+0.0
1,231,675	+				+0.6
1,231,676	-				-0.3
1,231,676	-				-1.0
1,231,694	+				-1.4
1,231,694	+				-0.5
1,231,694	+				+1.5
1,231,694	+				-0.6
1,231,694	+				-1.0
1,231,695	-				+1.7
1,231,695	-				-0.8
1,231,695	-				-0.0
1,231,695	-				-1.0
1,231,695	-				-1.2
1,231,695	-				-0.7
1,231,704	+				+0.7
1,231,991	-		Psyr_1089	0.60	+0.5
1,232,156	+				+1.1
1,232,156	+				-0.7
1,232,157	-				-1.1
1,232,157	-				-0.8
1,232,158	-				+0.5
1,232,251	+		Psyr_1090	0.19	-0.7
1,232,251	+		Psyr_1090	0.19	-1.3
1,232,251	+		Psyr_1090	0.19	-0.4
1,232,252	-		Psyr_1090	0.19	-1.9
1,232,252	-		Psyr_1090	0.19	-1.8
1,232,492	+		Psyr_1090	0.75	-1.7
1,232,492	+		Psyr_1090	0.75	-1.2
1,232,492	+		Psyr_1090	0.75	-0.5
1,232,492	+		Psyr_1090	0.75	-2.2
1,232,492	+		Psyr_1090	0.75	-1.0
1,232,492	+		Psyr_1090	0.75	-0.9
1,232,492	+		Psyr_1090	0.75	-1.8
1,232,492	+		Psyr_1090	0.75	-0.3
1,232,579	+				-1.5
1,232,579	+				-2.3
1,232,579	+				+0.2
1,232,579	+				-1.1
1,232,580	-				+0.1
1,232,580	-				-0.9
1,232,580	-				-0.6
1,232,580	-				+1.4
1,232,580	-				-1.4
1,232,580	-				-2.3
1,232,580	-				+0.3
1,232,657	+				-2.4
1,232,657	+				-1.6
1,232,658	-				+1.2
1,232,681	+				-0.5
1,232,682	-				+0.1
1,232,682	-				-0.6
1,232,882	+		Psyr_1091	0.15	-0.7
1,232,882	+		Psyr_1091	0.15	+0.8
1,233,065	+		Psyr_1091	0.27	-1.9
1,233,395	+		Psyr_1091	0.50	-1.2
1,233,396	-		Psyr_1091	0.50	-2.0
1,233,396	-		Psyr_1091	0.50	-2.8
1,233,548	+		Psyr_1091	0.60	-1.5
1,233,548	+		Psyr_1091	0.60	-2.2
1,233,549	-		Psyr_1091	0.60	+1.5