Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1033

Experiment: KB with Novobiocin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1032 and Psyr_1033 are separated by 703 nucleotidesPsyr_1033 and Psyr_1034 are separated by 411 nucleotidesPsyr_1034 and Psyr_1035 are separated by 61 nucleotides Psyr_1032: Psyr_1032 - UDP-N-Acetylglucosamine 2-epimerase, at 1,165,785 to 1,167,035 _1032 Psyr_1033: Psyr_1033 - YebG, at 1,167,739 to 1,168,005 _1033 Psyr_1034: Psyr_1034 - Phosphate-starvation-inducible E, at 1,168,417 to 1,168,905 _1034 Psyr_1035: Psyr_1035 - lipoprotein, putative, at 1,168,967 to 1,169,299 _1035 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1166.848 kb on + strand, within Psyr_1032at 1166.848 kb on + strand, within Psyr_1032at 1166.849 kb on - strand, within Psyr_1032at 1167.036 kb on + strandat 1167.036 kb on + strandat 1167.036 kb on + strandat 1167.037 kb on - strandat 1167.224 kb on + strandat 1167.535 kb on - strandat 1167.613 kb on + strandat 1167.634 kb on + strandat 1167.634 kb on + strandat 1167.636 kb on + strandat 1167.636 kb on + strandat 1167.637 kb on - strandat 1167.637 kb on - strandat 1167.637 kb on - strandat 1167.637 kb on - strandat 1167.642 kb on - strandat 1167.651 kb on + strandat 1167.651 kb on + strandat 1167.652 kb on - strandat 1167.652 kb on - strandat 1167.652 kb on - strandat 1167.681 kb on + strandat 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.833 kb on + strand, within Psyr_1033at 1167.834 kb on - strand, within Psyr_1033at 1167.834 kb on - strand, within Psyr_1033at 1168.023 kb on - strandat 1168.023 kb on - strandat 1168.081 kb on + strandat 1168.123 kb on + strandat 1168.246 kb on + strandat 1168.247 kb on - strandat 1168.314 kb on + strandat 1168.314 kb on + strandat 1168.315 kb on - strandat 1168.319 kb on + strandat 1168.319 kb on + strandat 1168.319 kb on + strandat 1168.320 kb on - strandat 1168.320 kb on - strandat 1168.320 kb on - strandat 1168.338 kb on + strandat 1168.367 kb on + strandat 1168.367 kb on + strandat 1168.367 kb on + strandat 1168.367 kb on + strandat 1168.367 kb on + strandat 1168.368 kb on - strandat 1168.368 kb on - strandat 1168.368 kb on - strandat 1168.437 kb on - strandat 1168.442 kb on + strandat 1168.442 kb on + strandat 1168.443 kb on - strandat 1168.443 kb on - strandat 1168.443 kb on - strandat 1168.618 kb on + strand, within Psyr_1034at 1168.618 kb on + strand, within Psyr_1034at 1168.619 kb on - strand, within Psyr_1034at 1168.619 kb on - strand, within Psyr_1034at 1168.619 kb on - strand, within Psyr_1034at 1168.649 kb on - strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.687 kb on + strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.688 kb on - strand, within Psyr_1034at 1168.765 kb on + strand, within Psyr_1034at 1168.765 kb on + strand, within Psyr_1034at 1168.765 kb on + strand, within Psyr_1034at 1168.765 kb on + strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.766 kb on - strand, within Psyr_1034at 1168.816 kb on + strand, within Psyr_1034at 1168.817 kb on - strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.825 kb on + strand, within Psyr_1034at 1168.826 kb on - strand, within Psyr_1034at 1168.826 kb on - strand, within Psyr_1034at 1168.826 kb on - strand, within Psyr_1034at 1168.831 kb on + strand, within Psyr_1034at 1168.832 kb on - strand, within Psyr_1034at 1168.908 kb on + strandat 1168.908 kb on + strandat 1168.908 kb on + strandat 1168.908 kb on + strandat 1168.908 kb on + strandat 1168.909 kb on - strandat 1168.909 kb on - strandat 1168.952 kb on + strandat 1168.952 kb on + strandat 1168.954 kb on + strandat 1168.954 kb on + strandat 1168.954 kb on + strandat 1168.955 kb on - strandat 1168.955 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
remove
1,166,848 + Psyr_1032 0.85 -1.2
1,166,848 + Psyr_1032 0.85 -2.3
1,166,849 - Psyr_1032 0.85 -2.2
1,167,036 + -2.3
1,167,036 + -0.3
1,167,036 + +0.1
1,167,037 - +1.5
1,167,224 + +0.4
1,167,535 - -0.6
1,167,613 + -1.3
1,167,634 + +3.6
1,167,634 + +0.5
1,167,636 + -2.6
1,167,636 + +0.0
1,167,637 - -1.6
1,167,637 - -1.2
1,167,637 - -1.0
1,167,637 - -1.5
1,167,642 - -3.8
1,167,651 + +0.3
1,167,651 + -0.5
1,167,652 - -1.4
1,167,652 - -4.0
1,167,652 - -0.6
1,167,681 + -1.5
1,167,833 + Psyr_1033 0.35 -0.0
1,167,833 + Psyr_1033 0.35 -0.4
1,167,833 + Psyr_1033 0.35 -1.0
1,167,833 + Psyr_1033 0.35 -1.2
1,167,833 + Psyr_1033 0.35 -0.6
1,167,833 + Psyr_1033 0.35 +0.8
1,167,833 + Psyr_1033 0.35 +0.2
1,167,834 - Psyr_1033 0.36 -2.4
1,167,834 - Psyr_1033 0.36 -1.1
1,168,023 - +0.2
1,168,023 - +0.3
1,168,081 + -0.8
1,168,123 + +1.6
1,168,246 + -0.3
1,168,247 - -1.0
1,168,314 + +0.8
1,168,314 + -1.9
1,168,315 - +1.0
1,168,319 + +1.1
1,168,319 + +1.2
1,168,319 + +0.1
1,168,320 - -1.3
1,168,320 - +0.7
1,168,320 - +0.5
1,168,338 + +0.6
1,168,367 + +1.4
1,168,367 + -0.7
1,168,367 + -0.3
1,168,367 + +0.1
1,168,367 + +0.8
1,168,368 - -1.0
1,168,368 - +0.4
1,168,368 - +0.2
1,168,437 - -1.0
1,168,442 + +1.1
1,168,442 + +2.0
1,168,443 - -2.2
1,168,443 - -2.6
1,168,443 - +1.3
1,168,618 + Psyr_1034 0.41 +0.5
1,168,618 + Psyr_1034 0.41 +1.0
1,168,619 - Psyr_1034 0.41 +0.3
1,168,619 - Psyr_1034 0.41 -1.3
1,168,619 - Psyr_1034 0.41 -0.2
1,168,649 - Psyr_1034 0.47 -0.9
1,168,687 + Psyr_1034 0.55 +0.2
1,168,687 + Psyr_1034 0.55 -0.5
1,168,687 + Psyr_1034 0.55 -0.4
1,168,687 + Psyr_1034 0.55 -2.6
1,168,687 + Psyr_1034 0.55 -0.1
1,168,687 + Psyr_1034 0.55 -0.6
1,168,687 + Psyr_1034 0.55 +1.1
1,168,687 + Psyr_1034 0.55 -1.2
1,168,687 + Psyr_1034 0.55 -0.7
1,168,687 + Psyr_1034 0.55 -0.2
1,168,687 + Psyr_1034 0.55 -0.2
1,168,687 + Psyr_1034 0.55 -0.8
1,168,687 + Psyr_1034 0.55 +0.2
1,168,687 + Psyr_1034 0.55 +2.4
1,168,687 + Psyr_1034 0.55 -0.0
1,168,687 + Psyr_1034 0.55 +0.8
1,168,688 - Psyr_1034 0.55 +0.3
1,168,688 - Psyr_1034 0.55 -1.6
1,168,688 - Psyr_1034 0.55 -0.6
1,168,688 - Psyr_1034 0.55 -0.2
1,168,688 - Psyr_1034 0.55 +2.0
1,168,688 - Psyr_1034 0.55 -1.1
1,168,688 - Psyr_1034 0.55 -0.7
1,168,688 - Psyr_1034 0.55 -0.0
1,168,688 - Psyr_1034 0.55 -1.9
1,168,688 - Psyr_1034 0.55 +0.0
1,168,688 - Psyr_1034 0.55 -0.3
1,168,688 - Psyr_1034 0.55 -0.3
1,168,765 + Psyr_1034 0.71 -0.1
1,168,765 + Psyr_1034 0.71 +0.3
1,168,765 + Psyr_1034 0.71 -0.6
1,168,765 + Psyr_1034 0.71 -2.2
1,168,766 - Psyr_1034 0.71 -1.4
1,168,766 - Psyr_1034 0.71 -0.3
1,168,766 - Psyr_1034 0.71 -1.7
1,168,766 - Psyr_1034 0.71 -0.5
1,168,766 - Psyr_1034 0.71 -0.9
1,168,766 - Psyr_1034 0.71 -1.0
1,168,766 - Psyr_1034 0.71 +0.1
1,168,766 - Psyr_1034 0.71 -0.5
1,168,816 + Psyr_1034 0.82 -0.8
1,168,817 - Psyr_1034 0.82 -0.7
1,168,825 + Psyr_1034 0.83 -2.4
1,168,825 + Psyr_1034 0.83 +0.1
1,168,825 + Psyr_1034 0.83 -0.2
1,168,825 + Psyr_1034 0.83 +0.2
1,168,825 + Psyr_1034 0.83 -0.6
1,168,825 + Psyr_1034 0.83 -0.5
1,168,826 - Psyr_1034 0.84 +0.1
1,168,826 - Psyr_1034 0.84 +0.4
1,168,826 - Psyr_1034 0.84 +0.1
1,168,831 + Psyr_1034 0.85 -0.2
1,168,832 - Psyr_1034 0.85 +0.5
1,168,908 + -1.1
1,168,908 + +1.2
1,168,908 + -0.3
1,168,908 + +0.7
1,168,908 + -0.2
1,168,909 - +0.4
1,168,909 - +0.4
1,168,952 + -1.2
1,168,952 + +0.5
1,168,954 + -0.1
1,168,954 + +0.0
1,168,954 + +0.4
1,168,955 - +1.8
1,168,955 - -0.9

Or see this region's nucleotide sequence