Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1005

Experiment: KB with Novobiocin 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Novobiocin 250 ug/ml
1,138,505	-		Psyr_1004	0.11	+0.3
1,138,817	-		Psyr_1004	0.44	-1.2
1,138,839	+		Psyr_1004	0.47	+0.4
1,138,839	+		Psyr_1004	0.47	+0.7
1,138,840	-		Psyr_1004	0.47	+0.8
1,138,950	-		Psyr_1004	0.59	+1.2
1,138,950	-		Psyr_1004	0.59	-0.1
1,139,205	+		Psyr_1004	0.86	-0.9
1,139,206	-		Psyr_1004	0.86	+0.6
1,139,310	+				+0.3
1,139,311	-				+1.1
1,139,516	-		Psyr_1005	0.11	+1.3
1,139,551	-		Psyr_1005	0.16	+0.9
1,139,570	-		Psyr_1005	0.19	+0.2
1,139,570	-		Psyr_1005	0.19	+1.0
1,139,570	-		Psyr_1005	0.19	+0.9
1,139,690	-		Psyr_1005	0.36	+1.0
1,139,690	-		Psyr_1005	0.36	+0.2
1,139,690	-		Psyr_1005	0.36	+0.1
1,139,692	+		Psyr_1005	0.37	-0.8
1,139,692	+		Psyr_1005	0.37	-0.4
1,139,693	-		Psyr_1005	0.37	+0.2
1,139,693	-		Psyr_1005	0.37	-1.9
1,139,750	+		Psyr_1005	0.45	-0.5
1,139,751	-		Psyr_1005	0.45	+0.9
1,139,751	-		Psyr_1005	0.45	-2.6
1,139,751	-		Psyr_1005	0.45	-2.2
1,139,836	+		Psyr_1005	0.57	+0.0
1,139,836	+		Psyr_1005	0.57	-0.2
1,139,837	-		Psyr_1005	0.58	+0.2
1,139,837	-		Psyr_1005	0.58	+1.3
1,139,977	+		Psyr_1005	0.78	-1.6
1,139,977	+		Psyr_1005	0.78	+0.4
1,139,978	-		Psyr_1005	0.78	+0.2
1,139,978	-		Psyr_1005	0.78	-0.6
1,140,124	+				-0.3
1,140,167	+				+0.0
1,140,178	+				-1.6
1,140,178	+				-1.0
1,140,179	-				+0.4
1,140,179	-				-0.2
1,140,179	-				-0.1
1,140,179	-				+1.1
1,140,828	+		Psyr_1006	0.51	-0.8
1,140,829	-		Psyr_1006	0.52	-0.3
1,140,829	-		Psyr_1006	0.52	+0.4
1,140,829	-		Psyr_1006	0.52	-1.9
1,140,937	+		Psyr_1006	0.63	+0.1
1,140,937	+		Psyr_1006	0.63	-0.6
1,140,937	+		Psyr_1006	0.63	-0.9
1,140,938	-		Psyr_1006	0.64	+0.2
1,140,938	-		Psyr_1006	0.64	-1.2
1,140,954	+		Psyr_1006	0.65	-1.1
1,140,954	+		Psyr_1006	0.65	-2.4
1,140,954	+		Psyr_1006	0.65	-1.5
1,140,955	-		Psyr_1006	0.65	-0.3
1,140,955	-		Psyr_1006	0.65	+0.8
1,140,955	-		Psyr_1006	0.65	+0.5
1,141,005	+		Psyr_1006	0.71	-0.3
1,141,005	+		Psyr_1006	0.71	+0.4
1,141,005	+		Psyr_1006	0.71	-1.7
1,141,006	-		Psyr_1006	0.71	-1.0