Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0904

Experiment: KB with Novobiocin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0903 and Psyr_0904 are separated by 499 nucleotidesPsyr_0904 and Psyr_0905 are separated by 63 nucleotides Psyr_0903: Psyr_0903 - outer membrane porin, at 1,022,073 to 1,023,341 _0903 Psyr_0904: Psyr_0904 - Short-chain dehydrogenase/reductase SDR, at 1,023,841 to 1,024,605 _0904 Psyr_0905: Psyr_0905 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,024,669 to 1,026,591 _0905 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1023.061 kb on + strand, within Psyr_0903at 1023.094 kb on - strand, within Psyr_0903at 1023.201 kb on - strand, within Psyr_0903at 1023.211 kb on + strand, within Psyr_0903at 1023.211 kb on + strand, within Psyr_0903at 1023.211 kb on + strand, within Psyr_0903at 1023.212 kb on - strand, within Psyr_0903at 1023.212 kb on - strand, within Psyr_0903at 1023.342 kb on + strandat 1023.342 kb on + strandat 1023.343 kb on - strandat 1023.343 kb on - strandat 1023.343 kb on - strandat 1023.420 kb on + strandat 1023.420 kb on + strandat 1023.420 kb on + strandat 1023.420 kb on + strandat 1023.421 kb on - strandat 1023.421 kb on - strandat 1023.421 kb on - strandat 1023.421 kb on - strandat 1023.421 kb on - strandat 1023.534 kb on - strandat 1023.534 kb on - strandat 1023.545 kb on + strandat 1023.545 kb on + strandat 1023.545 kb on + strandat 1023.546 kb on - strandat 1023.679 kb on + strandat 1023.680 kb on - strandat 1023.746 kb on - strandat 1023.768 kb on + strandat 1024.145 kb on + strand, within Psyr_0904at 1024.145 kb on + strand, within Psyr_0904at 1024.145 kb on - strand, within Psyr_0904at 1024.146 kb on - strand, within Psyr_0904at 1024.146 kb on - strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.192 kb on + strand, within Psyr_0904at 1024.193 kb on - strand, within Psyr_0904at 1024.193 kb on - strand, within Psyr_0904at 1024.193 kb on - strand, within Psyr_0904at 1024.294 kb on + strand, within Psyr_0904at 1024.294 kb on + strand, within Psyr_0904at 1024.294 kb on + strand, within Psyr_0904at 1024.294 kb on + strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.295 kb on - strand, within Psyr_0904at 1024.296 kb on + strand, within Psyr_0904at 1024.296 kb on + strand, within Psyr_0904at 1024.905 kb on + strand, within Psyr_0905at 1024.905 kb on + strand, within Psyr_0905at 1024.906 kb on - strand, within Psyr_0905at 1024.906 kb on - strand, within Psyr_0905at 1025.037 kb on + strand, within Psyr_0905at 1025.037 kb on + strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905at 1025.038 kb on - strand, within Psyr_0905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
remove
1,023,061 + Psyr_0903 0.78 +1.2
1,023,094 - Psyr_0903 0.80 -0.5
1,023,201 - Psyr_0903 0.89 -0.7
1,023,211 + Psyr_0903 0.90 -1.0
1,023,211 + Psyr_0903 0.90 -0.2
1,023,211 + Psyr_0903 0.90 +0.1
1,023,212 - Psyr_0903 0.90 -0.8
1,023,212 - Psyr_0903 0.90 -0.4
1,023,342 + -1.5
1,023,342 + +2.2
1,023,343 - +0.3
1,023,343 - +2.7
1,023,343 - -0.9
1,023,420 + +2.7
1,023,420 + +0.3
1,023,420 + -1.1
1,023,420 + -0.4
1,023,421 - +1.0
1,023,421 - +0.1
1,023,421 - -0.3
1,023,421 - -0.4
1,023,421 - +0.4
1,023,534 - -0.2
1,023,534 - -1.0
1,023,545 + +1.0
1,023,545 + +4.1
1,023,545 + -0.7
1,023,546 - -0.2
1,023,679 + +0.0
1,023,680 - +0.3
1,023,746 - -1.9
1,023,768 + +0.6
1,024,145 + Psyr_0904 0.40 +0.4
1,024,145 + Psyr_0904 0.40 -0.4
1,024,145 - Psyr_0904 0.40 -0.5
1,024,146 - Psyr_0904 0.40 +0.5
1,024,146 - Psyr_0904 0.40 -1.8
1,024,192 + Psyr_0904 0.46 -1.6
1,024,192 + Psyr_0904 0.46 +0.8
1,024,192 + Psyr_0904 0.46 -0.4
1,024,192 + Psyr_0904 0.46 -0.0
1,024,192 + Psyr_0904 0.46 +0.3
1,024,192 + Psyr_0904 0.46 -0.6
1,024,193 - Psyr_0904 0.46 -1.1
1,024,193 - Psyr_0904 0.46 -0.4
1,024,193 - Psyr_0904 0.46 +0.1
1,024,294 + Psyr_0904 0.59 +0.2
1,024,294 + Psyr_0904 0.59 +0.4
1,024,294 + Psyr_0904 0.59 +0.4
1,024,294 + Psyr_0904 0.59 -0.4
1,024,295 - Psyr_0904 0.59 +0.5
1,024,295 - Psyr_0904 0.59 -0.7
1,024,295 - Psyr_0904 0.59 -2.1
1,024,295 - Psyr_0904 0.59 +0.5
1,024,295 - Psyr_0904 0.59 -0.4
1,024,295 - Psyr_0904 0.59 -0.4
1,024,296 + Psyr_0904 0.59 -0.6
1,024,296 + Psyr_0904 0.59 -0.1
1,024,905 + Psyr_0905 0.12 -1.4
1,024,905 + Psyr_0905 0.12 +0.9
1,024,906 - Psyr_0905 0.12 -0.4
1,024,906 - Psyr_0905 0.12 +0.3
1,025,037 + Psyr_0905 0.19 +1.4
1,025,037 + Psyr_0905 0.19 -2.2
1,025,038 - Psyr_0905 0.19 -0.2
1,025,038 - Psyr_0905 0.19 -0.9
1,025,038 - Psyr_0905 0.19 +0.4
1,025,038 - Psyr_0905 0.19 +0.5
1,025,038 - Psyr_0905 0.19 +0.9
1,025,038 - Psyr_0905 0.19 -2.3

Or see this region's nucleotide sequence