Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0844 and Psyr_0845 are separated by 11 nucleotides Psyr_0845 and Psyr_0846 are separated by 397 nucleotides Psyr_0846 and Psyr_0847 are separated by 2 nucleotides Psyr_0847 and Psyr_0848 are separated by 47 nucleotides
Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346
_0844
Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774
_0845
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390
_0847
Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454
_0848
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 957.266 kb on + strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.360 kb on - strand at 957.369 kb on - strand at 957.369 kb on - strand at 957.710 kb on + strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.809 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.924 kb on + strand at 957.924 kb on + strand at 957.956 kb on - strand at 957.956 kb on - strand at 957.987 kb on + strand at 958.004 kb on + strand at 958.052 kb on + strand at 958.052 kb on + strand at 958.053 kb on - strand at 958.053 kb on - strand at 958.075 kb on + strand at 958.075 kb on + strand at 958.113 kb on - strand at 958.113 kb on - strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.158 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.183 kb on - strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.271 kb on + strand at 958.272 kb on - strand at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.486 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.692 kb on - strand, within Psyr_0846 at 958.798 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.969 kb on + strand, within Psyr_0846 at 959.267 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.390 kb on + strand, within Psyr_0846 at 959.390 kb on + strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.393 kb on + strand, within Psyr_0846 at 959.393 kb on + strand, within Psyr_0846 at 959.567 kb on + strand, within Psyr_0846 at 959.568 kb on - strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.708 kb on + strand, within Psyr_0846 at 959.709 kb on - strand, within Psyr_0846 at 959.728 kb on + strand at 959.866 kb on + strand at 959.867 kb on - strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.907 kb on + strand at 959.976 kb on + strand, within Psyr_0847 at 959.976 kb on + strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.257 kb on - strand, within Psyr_0847 at 960.388 kb on + strand at 960.388 kb on + strand at 960.397 kb on + strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.423 kb on + strand at 960.702 kb on + strand, within Psyr_0848 at 960.702 kb on + strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.774 kb on + strand, within Psyr_0848 at 960.894 kb on + strand, within Psyr_0848
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 957,266 + Psyr_0844 0.75 +1.0 957,267 - Psyr_0844 0.76 +0.6 957,267 - Psyr_0844 0.76 +0.5 957,267 - Psyr_0844 0.76 -0.9 957,267 - Psyr_0844 0.76 +0.2 957,360 - +0.3 957,369 - +1.0 957,369 - +0.5 957,710 + Psyr_0845 0.84 -0.6 957,711 - Psyr_0845 0.85 +0.2 957,711 - Psyr_0845 0.85 +0.1 957,711 - Psyr_0845 0.85 +0.2 957,809 + +1.1 957,814 + +3.4 957,814 + -1.4 957,814 + -0.1 957,814 + +0.6 957,814 + -0.2 957,814 + -0.5 957,814 + -1.5 957,924 + -0.6 957,924 + -0.5 957,956 - +3.1 957,956 - +1.7 957,987 + +0.8 958,004 + +1.2 958,052 + +1.2 958,052 + +0.5 958,053 - +1.4 958,053 - -0.6 958,075 + +0.0 958,075 + -0.8 958,113 - +0.2 958,113 - +2.4 958,118 + +0.8 958,118 + -0.1 958,118 + +1.6 958,118 + -0.2 958,118 + +0.5 958,119 - +1.2 958,119 - +1.3 958,119 - +1.0 958,119 - +0.4 958,119 - +0.6 958,121 + -2.8 958,121 + -0.1 958,121 + -0.3 958,158 + +0.4 958,182 + +0.1 958,182 + +1.5 958,182 + -1.3 958,183 - +1.5 958,234 + +0.4 958,234 + -0.4 958,234 + +1.4 958,234 + +0.3 958,234 + +1.6 958,234 + +2.0 958,234 + +1.6 958,234 + +1.5 958,234 + +1.6 958,235 - +1.3 958,235 - +1.5 958,235 - +0.6 958,235 - +1.1 958,235 - +1.1 958,235 - +2.1 958,235 - +0.2 958,235 - +0.3 958,238 + +0.8 958,238 + -1.8 958,238 + -0.5 958,238 + +1.2 958,238 + -0.5 958,238 + +0.9 958,238 + +2.2 958,238 + +1.1 958,238 + +1.1 958,239 - +0.8 958,239 - +0.3 958,239 - +0.3 958,239 - +0.5 958,239 - +1.1 958,239 - -0.7 958,239 - +1.1 958,239 - +0.9 958,239 - +1.1 958,239 - +0.9 958,239 - -0.4 958,239 - +1.0 958,271 + +0.8 958,272 - -0.2 958,439 + Psyr_0846 0.15 +0.6 958,439 + Psyr_0846 0.15 -0.7 958,439 + Psyr_0846 0.15 +0.9 958,439 + Psyr_0846 0.15 +0.6 958,439 + Psyr_0846 0.15 -1.6 958,440 - Psyr_0846 0.16 +1.0 958,440 - Psyr_0846 0.16 -0.5 958,440 - Psyr_0846 0.16 +0.0 958,440 - Psyr_0846 0.16 -1.3 958,486 + Psyr_0846 0.18 -0.3 958,610 + Psyr_0846 0.25 +3.7 958,610 + Psyr_0846 0.25 +1.9 958,611 - Psyr_0846 0.25 +2.5 958,611 - Psyr_0846 0.25 -0.0 958,611 - Psyr_0846 0.25 -0.1 958,611 - Psyr_0846 0.25 +1.2 958,611 - Psyr_0846 0.25 +1.1 958,691 + Psyr_0846 0.30 +2.1 958,691 + Psyr_0846 0.30 +0.5 958,691 + Psyr_0846 0.30 +2.7 958,692 - Psyr_0846 0.30 -0.5 958,798 + Psyr_0846 0.36 +0.8 958,961 + Psyr_0846 0.46 +0.2 958,961 + Psyr_0846 0.46 +0.7 958,961 + Psyr_0846 0.46 +1.5 958,961 + Psyr_0846 0.46 +0.8 958,962 - Psyr_0846 0.46 +2.1 958,962 - Psyr_0846 0.46 +1.0 958,962 - Psyr_0846 0.46 +0.5 958,969 + Psyr_0846 0.46 +2.7 959,267 + Psyr_0846 0.63 +0.4 959,345 + Psyr_0846 0.68 +1.2 959,345 + Psyr_0846 0.68 +0.8 959,345 + Psyr_0846 0.68 +0.5 959,345 + Psyr_0846 0.68 +3.3 959,345 + Psyr_0846 0.68 +0.0 959,345 + Psyr_0846 0.68 +0.0 959,345 + Psyr_0846 0.68 +1.7 959,345 + Psyr_0846 0.68 +0.1 959,345 + Psyr_0846 0.68 +0.8 959,346 - Psyr_0846 0.68 +0.1 959,346 - Psyr_0846 0.68 +2.0 959,346 - Psyr_0846 0.68 +2.2 959,346 - Psyr_0846 0.68 +1.1 959,346 - Psyr_0846 0.68 +2.2 959,346 - Psyr_0846 0.68 +0.4 959,346 - Psyr_0846 0.68 +2.3 959,346 - Psyr_0846 0.68 +0.8 959,390 + Psyr_0846 0.71 +2.5 959,390 + Psyr_0846 0.71 +1.6 959,391 - Psyr_0846 0.71 +0.4 959,391 - Psyr_0846 0.71 -0.5 959,391 - Psyr_0846 0.71 +1.6 959,391 - Psyr_0846 0.71 +1.4 959,393 + Psyr_0846 0.71 +0.5 959,393 + Psyr_0846 0.71 +1.4 959,567 + Psyr_0846 0.81 +0.8 959,568 - Psyr_0846 0.81 +1.0 959,642 + Psyr_0846 0.85 +0.2 959,642 + Psyr_0846 0.85 +0.2 959,666 + Psyr_0846 0.87 +1.4 959,666 + Psyr_0846 0.87 +2.5 959,666 + Psyr_0846 0.87 +1.1 959,666 + Psyr_0846 0.87 +2.4 959,666 + Psyr_0846 0.87 +1.3 959,666 + Psyr_0846 0.87 +1.0 959,667 - Psyr_0846 0.87 +1.3 959,667 - Psyr_0846 0.87 -1.2 959,708 + Psyr_0846 0.89 +0.7 959,709 - Psyr_0846 0.89 +2.5 959,728 + +1.1 959,866 + +0.4 959,867 - -2.6 959,894 + +0.6 959,894 + -1.5 959,894 + +0.1 959,894 + +2.1 959,894 + +0.2 959,894 + +0.0 959,894 + +0.8 959,894 + +0.8 959,895 - +1.0 959,895 - +0.2 959,895 - +0.9 959,895 - +1.9 959,895 - +1.2 959,895 - +1.8 959,895 - +0.8 959,895 - +0.3 959,907 + +1.4 959,976 + Psyr_0847 0.16 +1.7 959,976 + Psyr_0847 0.16 +1.8 959,977 - Psyr_0847 0.16 -0.3 959,977 - Psyr_0847 0.16 +1.7 959,977 - Psyr_0847 0.16 +0.7 959,980 + Psyr_0847 0.16 +1.0 959,980 + Psyr_0847 0.16 -0.2 959,980 + Psyr_0847 0.16 +0.4 959,980 + Psyr_0847 0.16 +2.8 959,980 + Psyr_0847 0.16 +2.2 959,980 + Psyr_0847 0.16 +1.2 959,980 + Psyr_0847 0.16 +1.3 959,980 + Psyr_0847 0.16 +0.9 959,981 - Psyr_0847 0.17 +1.2 959,981 - Psyr_0847 0.17 +2.4 959,981 - Psyr_0847 0.17 +0.9 959,981 - Psyr_0847 0.17 +1.3 959,981 - Psyr_0847 0.17 +0.8 959,981 - Psyr_0847 0.17 -0.3 959,981 - Psyr_0847 0.17 +1.2 960,050 + Psyr_0847 0.31 +3.5 960,050 + Psyr_0847 0.31 +1.3 960,051 - Psyr_0847 0.31 +0.6 960,051 - Psyr_0847 0.31 +0.2 960,257 - Psyr_0847 0.73 +1.6 960,388 + -1.8 960,388 + -0.4 960,397 + -0.6 960,398 - +1.6 960,398 - +0.9 960,398 - -1.0 960,423 + +0.2 960,702 + Psyr_0848 0.26 -0.1 960,702 + Psyr_0848 0.26 -1.1 960,703 - Psyr_0848 0.26 +3.5 960,703 - Psyr_0848 0.26 +0.6 960,703 - Psyr_0848 0.26 +2.4 960,774 + Psyr_0848 0.33 +0.3 960,894 + Psyr_0848 0.45 +0.3
Or see this region's nucleotide sequence