Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0772

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0771 and Psyr_0772 are separated by 12 nucleotidesPsyr_0772 and Psyr_0773 overlap by 4 nucleotides Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741 _0771 Psyr_0772: Psyr_0772 - Protein of unknown function DUF1355, at 876,754 to 877,509 _0772 Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621 _0773 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.789 kb on + strand, within Psyr_0771at 875.790 kb on - strand, within Psyr_0771at 875.883 kb on + strand, within Psyr_0771at 875.884 kb on - strand, within Psyr_0771at 875.884 kb on - strand, within Psyr_0771at 876.006 kb on - strand, within Psyr_0771at 876.042 kb on + strand, within Psyr_0771at 876.091 kb on + strand, within Psyr_0771at 876.091 kb on + strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.139 kb on - strand, within Psyr_0771at 876.139 kb on - strand, within Psyr_0771at 876.234 kb on - strand, within Psyr_0771at 876.347 kb on - strand, within Psyr_0771at 876.726 kb on + strandat 876.727 kb on - strandat 876.727 kb on - strandat 876.727 kb on - strandat 876.968 kb on + strand, within Psyr_0772at 876.980 kb on + strand, within Psyr_0772at 877.070 kb on + strand, within Psyr_0772at 877.085 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.267 kb on - strand, within Psyr_0772at 877.495 kb on + strandat 877.651 kb on + strand, within Psyr_0773at 877.651 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.810 kb on + strand, within Psyr_0773at 877.810 kb on + strand, within Psyr_0773at 877.811 kb on - strand, within Psyr_0773at 877.811 kb on - strand, within Psyr_0773at 877.831 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.228 kb on + strand, within Psyr_0773at 878.228 kb on + strand, within Psyr_0773

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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875,789 + Psyr_0771 0.17 +0.7
875,790 - Psyr_0771 0.17 -0.9
875,883 + Psyr_0771 0.25 -0.3
875,884 - Psyr_0771 0.25 +0.1
875,884 - Psyr_0771 0.25 -0.1
876,006 - Psyr_0771 0.36 +0.9
876,042 + Psyr_0771 0.39 -0.2
876,091 + Psyr_0771 0.43 +0.3
876,091 + Psyr_0771 0.43 -2.2
876,092 - Psyr_0771 0.43 +0.8
876,092 - Psyr_0771 0.43 +0.5
876,092 - Psyr_0771 0.43 +2.3
876,134 + Psyr_0771 0.47 +0.1
876,134 + Psyr_0771 0.47 -0.6
876,134 + Psyr_0771 0.47 -0.2
876,134 + Psyr_0771 0.47 +1.2
876,134 + Psyr_0771 0.47 -0.1
876,134 + Psyr_0771 0.47 -0.1
876,134 + Psyr_0771 0.47 +0.8
876,134 + Psyr_0771 0.47 -0.4
876,134 + Psyr_0771 0.47 -0.9
876,134 + Psyr_0771 0.47 +0.4
876,135 - Psyr_0771 0.47 +0.0
876,135 - Psyr_0771 0.47 -1.1
876,135 - Psyr_0771 0.47 +0.6
876,135 - Psyr_0771 0.47 +0.5
876,135 - Psyr_0771 0.47 +0.5
876,135 - Psyr_0771 0.47 +1.6
876,135 - Psyr_0771 0.47 +0.9
876,138 + Psyr_0771 0.47 -1.4
876,138 + Psyr_0771 0.47 +0.8
876,138 + Psyr_0771 0.47 -2.4
876,139 - Psyr_0771 0.47 -0.3
876,139 - Psyr_0771 0.47 +1.1
876,234 - Psyr_0771 0.56 +0.6
876,347 - Psyr_0771 0.65 -0.9
876,726 + -1.4
876,727 - -0.5
876,727 - +1.4
876,727 - +0.6
876,968 + Psyr_0772 0.28 +1.2
876,980 + Psyr_0772 0.30 -0.7
877,070 + Psyr_0772 0.42 -0.6
877,085 - Psyr_0772 0.44 +2.2
877,194 - Psyr_0772 0.58 +1.3
877,194 - Psyr_0772 0.58 +0.0
877,194 - Psyr_0772 0.58 +2.1
877,267 - Psyr_0772 0.68 -0.7
877,495 + +0.8
877,651 + Psyr_0773 0.13 -0.2
877,651 + Psyr_0773 0.13 -1.1
877,807 + Psyr_0773 0.27 -0.5
877,807 + Psyr_0773 0.27 +1.2
877,807 + Psyr_0773 0.27 -0.1
877,807 + Psyr_0773 0.27 -0.2
877,807 + Psyr_0773 0.27 -0.6
877,807 + Psyr_0773 0.27 +0.3
877,807 + Psyr_0773 0.27 -0.1
877,807 + Psyr_0773 0.27 +0.3
877,807 + Psyr_0773 0.27 -2.9
877,807 + Psyr_0773 0.27 +0.1
877,807 + Psyr_0773 0.27 +2.2
877,807 + Psyr_0773 0.27 +0.4
877,807 + Psyr_0773 0.27 +0.4
877,807 + Psyr_0773 0.27 +0.2
877,808 - Psyr_0773 0.27 +0.7
877,808 - Psyr_0773 0.27 +0.8
877,808 - Psyr_0773 0.27 +1.0
877,808 - Psyr_0773 0.27 +0.8
877,808 - Psyr_0773 0.27 +1.4
877,808 - Psyr_0773 0.27 +0.5
877,808 - Psyr_0773 0.27 +0.2
877,810 + Psyr_0773 0.27 +0.4
877,810 + Psyr_0773 0.27 -1.0
877,811 - Psyr_0773 0.27 -0.4
877,811 - Psyr_0773 0.27 +0.4
877,831 + Psyr_0773 0.29 -1.3
878,182 + Psyr_0773 0.61 +0.4
878,182 + Psyr_0773 0.61 -0.2
878,182 + Psyr_0773 0.61 +0.1
878,182 + Psyr_0773 0.61 -1.0
878,182 + Psyr_0773 0.61 +0.1
878,183 - Psyr_0773 0.61 -0.7
878,183 - Psyr_0773 0.61 +0.4
878,183 - Psyr_0773 0.61 +1.4
878,183 - Psyr_0773 0.61 -0.9
878,183 - Psyr_0773 0.61 +1.3
878,207 - Psyr_0773 0.63 +1.0
878,207 - Psyr_0773 0.63 +0.6
878,207 - Psyr_0773 0.63 +1.1
878,228 + Psyr_0773 0.65 +0.0
878,228 + Psyr_0773 0.65 -2.2

Or see this region's nucleotide sequence