Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0690

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0689 and Psyr_0690 are separated by 33 nucleotidesPsyr_0690 and Psyr_0691 are separated by 204 nucleotides Psyr_0689: Psyr_0689 - methylmalonate-semialdehyde dehydrogenase (acylating), at 792,585 to 794,111 _0689 Psyr_0690: Psyr_0690 - 3-hydroxyisobutyrate dehydrogenase, at 794,145 to 795,032 _0690 Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964 _0691 Position (kb) 794 795 796Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 793.317 kb on + strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.387 kb on + strand, within Psyr_0689at 793.427 kb on - strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.925 kb on + strand, within Psyr_0689at 793.926 kb on - strand, within Psyr_0689at 794.002 kb on - strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.174 kb on + strandat 794.365 kb on - strand, within Psyr_0690at 794.762 kb on + strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.796 kb on + strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.955 kb on + strandat 794.956 kb on - strandat 795.030 kb on + strandat 795.030 kb on + strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.291 kb on + strandat 795.292 kb on - strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.405 kb on - strandat 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.675 kb on + strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.740 kb on - strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.921 kb on + strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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793,317 + Psyr_0689 0.48 +0.6
793,317 + Psyr_0689 0.48 -1.1
793,387 + Psyr_0689 0.53 +0.5
793,427 - Psyr_0689 0.55 +0.1
793,749 + Psyr_0689 0.76 -0.2
793,749 + Psyr_0689 0.76 +0.1
793,749 + Psyr_0689 0.76 -0.8
793,749 + Psyr_0689 0.76 +1.5
793,749 + Psyr_0689 0.76 +0.2
793,749 + Psyr_0689 0.76 +0.4
793,750 - Psyr_0689 0.76 -0.8
793,750 - Psyr_0689 0.76 -0.0
793,750 - Psyr_0689 0.76 -1.1
793,925 + Psyr_0689 0.88 +2.4
793,926 - Psyr_0689 0.88 -0.0
794,002 - -1.1
794,025 + +0.3
794,025 + -0.1
794,025 + -0.2
794,025 + -0.6
794,025 + +0.5
794,025 + +0.2
794,025 + -0.1
794,026 - -0.9
794,026 - -2.6
794,026 - +0.1
794,026 - -1.5
794,026 - -0.8
794,026 - +0.5
794,026 - -0.7
794,174 + +0.6
794,365 - Psyr_0690 0.25 -0.0
794,762 + Psyr_0690 0.69 -0.5
794,763 - Psyr_0690 0.70 -1.6
794,763 - Psyr_0690 0.70 -2.3
794,796 + Psyr_0690 0.73 +0.4
794,797 - Psyr_0690 0.73 -0.2
794,797 - Psyr_0690 0.73 -1.3
794,797 - Psyr_0690 0.73 +0.7
794,797 - Psyr_0690 0.73 -1.2
794,797 - Psyr_0690 0.73 -0.7
794,797 - Psyr_0690 0.73 -0.3
794,955 + +1.2
794,956 - -1.1
795,030 + -0.3
795,030 + -0.7
795,031 - +3.2
795,031 - +0.4
795,031 - +0.4
795,031 - -0.8
795,031 - -1.8
795,031 - +1.2
795,291 + -0.4
795,292 - +0.7
795,388 + -0.0
795,388 + +0.5
795,388 + +1.0
795,388 + -0.3
795,388 + +0.4
795,389 - -0.6
795,389 - -1.6
795,389 - -1.6
795,389 - +0.8
795,389 - +0.4
795,389 - +1.2
795,405 - -0.9
795,570 + Psyr_0691 0.19 +1.0
795,570 + Psyr_0691 0.19 +0.5
795,570 + Psyr_0691 0.19 +0.7
795,570 + Psyr_0691 0.19 -1.4
795,570 + Psyr_0691 0.19 -0.8
795,570 + Psyr_0691 0.19 +1.0
795,570 + Psyr_0691 0.19 -0.6
795,570 + Psyr_0691 0.19 -0.5
795,570 + Psyr_0691 0.19 +0.0
795,570 + Psyr_0691 0.19 +1.0
795,570 + Psyr_0691 0.19 -0.5
795,571 - Psyr_0691 0.19 +1.1
795,571 - Psyr_0691 0.19 -0.4
795,571 - Psyr_0691 0.19 -1.2
795,571 - Psyr_0691 0.19 -1.0
795,571 - Psyr_0691 0.19 +0.1
795,571 - Psyr_0691 0.19 -0.5
795,571 - Psyr_0691 0.19 -0.5
795,675 + Psyr_0691 0.25 -1.0
795,676 - Psyr_0691 0.25 +0.3
795,676 - Psyr_0691 0.25 +0.1
795,676 - Psyr_0691 0.25 -0.9
795,676 - Psyr_0691 0.25 -3.4
795,739 + Psyr_0691 0.29 -2.0
795,739 + Psyr_0691 0.29 -3.9
795,739 + Psyr_0691 0.29 -0.8
795,740 - Psyr_0691 0.29 +0.5
795,761 + Psyr_0691 0.30 +0.0
795,761 + Psyr_0691 0.30 -0.4
795,921 + Psyr_0691 0.40 -0.4
795,922 - Psyr_0691 0.40 -0.3
795,922 - Psyr_0691 0.40 +1.0
795,922 - Psyr_0691 0.40 -1.2
796,002 + Psyr_0691 0.44 -1.1
796,002 + Psyr_0691 0.44 -0.2
796,003 - Psyr_0691 0.44 +0.3
796,003 - Psyr_0691 0.44 +0.3
796,003 - Psyr_0691 0.44 +1.4
796,003 - Psyr_0691 0.44 +3.1
796,003 - Psyr_0691 0.44 +0.3

Or see this region's nucleotide sequence