Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0501 and Psyr_0502 are separated by 23 nucleotides Psyr_0502 and Psyr_0503 are separated by 195 nucleotides
Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691
_0501
Psyr_0502: Psyr_0502 - potassium/proton antiporter, CPA1 family, at 547,715 to 549,511
_0502
Psyr_0503: Psyr_0503 - conserved domain protein, at 549,707 to 552,841
_0503
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 546.830 kb on - strand, within Psyr_0501 at 547.348 kb on + strand, within Psyr_0501 at 547.676 kb on + strand at 547.676 kb on + strand at 547.676 kb on + strand at 547.677 kb on - strand at 547.677 kb on - strand at 547.677 kb on - strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.920 kb on + strand, within Psyr_0502 at 548.086 kb on + strand, within Psyr_0502 at 548.087 kb on - strand, within Psyr_0502 at 548.087 kb on - strand, within Psyr_0502 at 548.087 kb on - strand, within Psyr_0502 at 548.237 kb on + strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.317 kb on + strand, within Psyr_0502 at 548.317 kb on + strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.712 kb on + strand, within Psyr_0502 at 548.712 kb on + strand, within Psyr_0502 at 548.713 kb on - strand, within Psyr_0502 at 549.146 kb on + strand, within Psyr_0502 at 549.288 kb on + strand, within Psyr_0502 at 549.288 kb on + strand, within Psyr_0502 at 549.288 kb on + strand, within Psyr_0502 at 549.288 kb on + strand, within Psyr_0502 at 549.289 kb on - strand, within Psyr_0502 at 549.289 kb on - strand, within Psyr_0502 at 549.289 kb on - strand, within Psyr_0502 at 549.347 kb on - strand at 549.347 kb on - strand at 549.347 kb on - strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.636 kb on - strand at 549.636 kb on - strand at 549.636 kb on - strand at 549.636 kb on - strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.643 kb on + strand at 549.643 kb on + strand at 549.670 kb on + strand at 549.671 kb on - strand at 549.731 kb on + strand at 549.821 kb on + strand at 549.821 kb on + strand at 549.822 kb on - strand at 549.947 kb on + strand at 549.947 kb on + strand at 549.947 kb on + strand at 549.947 kb on + strand at 549.947 kb on + strand at 549.948 kb on - strand at 549.948 kb on - strand at 549.948 kb on - strand at 549.948 kb on - strand at 550.031 kb on - strand, within Psyr_0503 at 550.154 kb on + strand, within Psyr_0503 at 550.154 kb on + strand, within Psyr_0503 at 550.190 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.270 kb on + strand, within Psyr_0503 at 550.313 kb on + strand, within Psyr_0503 at 550.314 kb on - strand, within Psyr_0503 at 550.373 kb on - strand, within Psyr_0503 at 550.373 kb on - strand, within Psyr_0503 at 550.401 kb on + strand, within Psyr_0503 at 550.401 kb on + strand, within Psyr_0503 at 550.401 kb on + strand, within Psyr_0503 at 550.402 kb on - strand, within Psyr_0503
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 546,830 - Psyr_0501 0.75 +0.7 547,348 + Psyr_0501 0.90 +0.1 547,676 + +1.0 547,676 + +0.7 547,676 + -0.1 547,677 - -1.3 547,677 - +0.4 547,677 - +0.4 547,697 + +2.0 547,697 + -1.2 547,697 + -0.9 547,697 + -0.8 547,697 + -1.9 547,697 + +0.3 547,698 - +0.5 547,698 - -0.4 547,698 - -0.8 547,698 - -2.0 547,810 + -0.2 547,810 + -0.0 547,810 + +1.0 547,810 + -0.6 547,811 - -2.0 547,811 - +1.1 547,811 - -0.1 547,811 - -0.2 547,811 - -0.3 547,920 + Psyr_0502 0.11 -1.1 548,086 + Psyr_0502 0.21 -0.8 548,087 - Psyr_0502 0.21 -1.0 548,087 - Psyr_0502 0.21 +0.1 548,087 - Psyr_0502 0.21 -0.6 548,237 + Psyr_0502 0.29 -1.0 548,238 - Psyr_0502 0.29 -0.0 548,317 + Psyr_0502 0.34 -1.9 548,317 + Psyr_0502 0.34 -1.3 548,370 + Psyr_0502 0.36 +0.7 548,370 + Psyr_0502 0.36 -0.9 548,370 + Psyr_0502 0.36 +0.2 548,370 + Psyr_0502 0.36 +0.4 548,371 - Psyr_0502 0.37 +0.4 548,371 - Psyr_0502 0.37 +1.1 548,371 - Psyr_0502 0.37 -0.3 548,712 + Psyr_0502 0.55 -2.5 548,712 + Psyr_0502 0.55 -0.7 548,713 - Psyr_0502 0.56 -0.7 549,146 + Psyr_0502 0.80 -0.6 549,288 + Psyr_0502 0.88 +0.9 549,288 + Psyr_0502 0.88 -0.9 549,288 + Psyr_0502 0.88 -0.4 549,288 + Psyr_0502 0.88 -2.2 549,289 - Psyr_0502 0.88 -2.9 549,289 - Psyr_0502 0.88 +0.4 549,289 - Psyr_0502 0.88 -1.8 549,347 - -0.1 549,347 - -0.6 549,347 - -0.7 549,635 + -0.4 549,635 + -0.3 549,635 + +0.4 549,635 + +0.9 549,635 + +0.4 549,635 + +0.2 549,635 + +0.6 549,635 + +0.0 549,635 + +0.4 549,635 + +0.5 549,635 + +0.5 549,635 + -0.8 549,636 - -0.4 549,636 - -0.9 549,636 - +0.2 549,636 - -1.2 549,639 + -0.6 549,639 + -1.1 549,639 + +0.3 549,639 + -0.0 549,639 + -0.8 549,639 + -0.5 549,639 + -0.2 549,639 + -0.8 549,639 + -0.2 549,639 + -0.3 549,639 + +1.1 549,639 + +0.2 549,639 + +0.4 549,639 + -0.3 549,639 + +0.4 549,639 + +0.3 549,639 + +0.2 549,639 + +0.8 549,639 + +0.8 549,639 + -0.3 549,639 + +0.5 549,639 + +0.4 549,639 + +1.4 549,639 + -1.1 549,639 + -0.2 549,639 + -0.8 549,639 + -0.2 549,639 + +0.4 549,639 + -0.3 549,639 + -0.6 549,639 + -0.3 549,639 + -0.3 549,639 + -0.2 549,639 + +0.1 549,639 + +1.4 549,639 + -0.9 549,639 + +0.3 549,639 + +1.3 549,639 + -0.3 549,639 + +0.4 549,639 + -0.0 549,639 + +0.3 549,639 + +0.7 549,639 + -0.0 549,639 + -0.6 549,639 + -1.2 549,639 + -0.3 549,639 + +0.3 549,639 + +1.1 549,639 + -0.9 549,639 + -0.3 549,639 + +1.9 549,639 + +0.7 549,639 + -0.4 549,640 - +1.8 549,640 - -0.3 549,640 - -0.6 549,640 - +0.4 549,640 - +0.3 549,640 - -0.1 549,640 - +1.0 549,640 - +0.2 549,640 - -0.7 549,640 - -0.8 549,640 - -0.6 549,640 - +1.8 549,640 - -0.7 549,640 - -0.9 549,640 - -0.4 549,640 - -0.1 549,640 - -0.6 549,640 - +0.9 549,640 - +0.9 549,640 - -0.2 549,640 - -1.2 549,640 - -0.3 549,640 - -3.1 549,640 - +0.0 549,640 - -1.5 549,640 - -0.5 549,640 - +1.5 549,640 - +0.2 549,640 - +0.1 549,640 - -0.9 549,640 - -2.9 549,640 - +0.6 549,640 - +1.5 549,640 - -0.6 549,640 - -0.2 549,640 - +0.2 549,640 - +0.3 549,640 - -0.8 549,640 - -0.6 549,640 - -0.9 549,640 - -0.2 549,640 - -0.3 549,640 - -1.0 549,640 - -0.0 549,640 - -2.2 549,640 - +0.4 549,640 - -0.9 549,640 - -1.7 549,640 - -1.1 549,640 - -1.4 549,640 - +0.1 549,640 - -0.6 549,641 + -0.2 549,641 + +0.5 549,641 + +0.1 549,641 + -0.4 549,641 + -0.3 549,641 + +0.5 549,641 + +0.3 549,641 + +0.3 549,641 + +1.4 549,641 + +0.2 549,642 - -2.1 549,642 - -1.0 549,642 - +0.0 549,642 - +0.3 549,642 - +0.4 549,642 - -3.2 549,642 - -0.9 549,642 - +0.3 549,642 - +0.2 549,642 - +1.0 549,642 - -0.4 549,642 - +0.6 549,642 - +0.1 549,642 - +0.3 549,642 - +0.6 549,643 + +1.1 549,643 + +0.3 549,670 + -0.2 549,671 - +0.5 549,731 + +0.1 549,821 + -0.2 549,821 + -0.1 549,822 - -4.4 549,947 + -0.4 549,947 + +0.8 549,947 + -0.3 549,947 + -0.7 549,947 + -1.2 549,948 - -2.7 549,948 - -0.7 549,948 - +0.4 549,948 - +0.2 550,031 - Psyr_0503 0.10 -0.3 550,154 + Psyr_0503 0.14 +0.5 550,154 + Psyr_0503 0.14 +0.3 550,190 + Psyr_0503 0.15 -1.4 550,238 + Psyr_0503 0.17 +0.9 550,238 + Psyr_0503 0.17 -0.8 550,238 + Psyr_0503 0.17 -1.9 550,238 + Psyr_0503 0.17 +0.4 550,238 + Psyr_0503 0.17 -0.1 550,238 + Psyr_0503 0.17 +0.1 550,238 + Psyr_0503 0.17 +0.7 550,238 + Psyr_0503 0.17 +0.1 550,238 + Psyr_0503 0.17 +0.4 550,238 + Psyr_0503 0.17 +0.4 550,238 + Psyr_0503 0.17 +0.6 550,239 - Psyr_0503 0.17 -0.6 550,239 - Psyr_0503 0.17 -3.9 550,239 - Psyr_0503 0.17 +1.0 550,239 - Psyr_0503 0.17 +0.4 550,239 - Psyr_0503 0.17 -0.1 550,239 - Psyr_0503 0.17 -0.1 550,239 - Psyr_0503 0.17 -0.5 550,239 - Psyr_0503 0.17 +1.7 550,239 - Psyr_0503 0.17 +2.7 550,239 - Psyr_0503 0.17 +0.9 550,239 - Psyr_0503 0.17 -1.1 550,239 - Psyr_0503 0.17 +0.3 550,239 - Psyr_0503 0.17 +0.1 550,269 - Psyr_0503 0.18 -0.7 550,269 - Psyr_0503 0.18 +0.6 550,269 - Psyr_0503 0.18 -0.6 550,269 - Psyr_0503 0.18 +0.2 550,270 + Psyr_0503 0.18 -0.4 550,313 + Psyr_0503 0.19 +1.5 550,314 - Psyr_0503 0.19 -0.1 550,373 - Psyr_0503 0.21 +1.4 550,373 - Psyr_0503 0.21 -1.7 550,401 + Psyr_0503 0.22 -1.5 550,401 + Psyr_0503 0.22 -1.9 550,401 + Psyr_0503 0.22 +1.0 550,402 - Psyr_0503 0.22 +0.6
Or see this region's nucleotide sequence