Experiment: KB with Novobiocin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0411 and Psyr_0412 are separated by 118 nucleotides Psyr_0412 and Psyr_0413 are separated by 333 nucleotides
Psyr_0411: Psyr_0411 - glutamate synthase (NADPH) large subunit, at 442,293 to 446,738
_0411
Psyr_0412: Psyr_0412 - glutamate synthase (NADPH) small subunit, at 446,857 to 448,275
_0412
Psyr_0413: Psyr_0413 - conserved hypothetical protein, at 448,609 to 451,833
_0413
Position (kb) 446
447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.989 kb on + strand, within Psyr_0411 at 446.090 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.157 kb on + strand, within Psyr_0411 at 446.158 kb on - strand, within Psyr_0411 at 446.158 kb on - strand, within Psyr_0411 at 446.181 kb on + strand, within Psyr_0411 at 446.182 kb on - strand, within Psyr_0411 at 446.284 kb on - strand, within Psyr_0411 at 446.346 kb on - strand at 446.346 kb on - strand at 446.360 kb on + strand at 446.360 kb on + strand at 446.360 kb on + strand at 446.360 kb on + strand at 446.360 kb on + strand at 446.360 kb on + strand at 446.361 kb on - strand at 446.397 kb on + strand at 446.397 kb on + strand at 446.397 kb on + strand at 446.397 kb on + strand at 446.398 kb on - strand at 446.440 kb on - strand at 446.476 kb on - strand at 446.566 kb on - strand at 446.598 kb on + strand at 446.599 kb on - strand at 446.599 kb on - strand at 446.599 kb on - strand at 446.655 kb on + strand at 446.655 kb on + strand at 446.655 kb on + strand at 446.655 kb on + strand at 446.656 kb on - strand at 446.904 kb on + strand at 446.904 kb on + strand at 446.905 kb on - strand at 447.025 kb on + strand, within Psyr_0412 at 447.026 kb on - strand, within Psyr_0412 at 447.094 kb on - strand, within Psyr_0412 at 447.238 kb on + strand, within Psyr_0412 at 447.238 kb on + strand, within Psyr_0412 at 447.238 kb on + strand, within Psyr_0412 at 447.238 kb on + strand, within Psyr_0412 at 447.238 kb on + strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.239 kb on - strand, within Psyr_0412 at 447.559 kb on + strand, within Psyr_0412 at 447.560 kb on - strand, within Psyr_0412 at 447.560 kb on - strand, within Psyr_0412 at 447.560 kb on - strand, within Psyr_0412 at 447.560 kb on - strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.589 kb on + strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.590 kb on - strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.595 kb on + strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.596 kb on - strand, within Psyr_0412 at 447.892 kb on + strand, within Psyr_0412 at 448.144 kb on + strand at 448.144 kb on + strand at 448.145 kb on - strand at 448.145 kb on - strand at 448.145 kb on - strand at 448.145 kb on - strand at 448.221 kb on + strand at 448.339 kb on + strand at 448.339 kb on + strand at 448.340 kb on - strand at 448.436 kb on - strand at 448.532 kb on - strand at 448.532 kb on - strand at 448.558 kb on + strand at 448.558 kb on + strand at 448.558 kb on + strand at 448.594 kb on + strand at 448.595 kb on - strand at 448.927 kb on - strand at 448.954 kb on + strand, within Psyr_0413 at 448.954 kb on + strand, within Psyr_0413 at 448.954 kb on + strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.955 kb on - strand, within Psyr_0413 at 448.956 kb on + strand, within Psyr_0413 at 448.956 kb on + strand, within Psyr_0413 at 448.956 kb on + strand, within Psyr_0413 at 448.956 kb on + strand, within Psyr_0413 at 448.956 kb on + strand, within Psyr_0413 at 448.957 kb on - strand, within Psyr_0413 at 448.957 kb on - strand, within Psyr_0413 at 448.957 kb on - strand, within Psyr_0413 at 448.957 kb on - strand, within Psyr_0413 at 449.052 kb on + strand, within Psyr_0413 at 449.052 kb on + strand, within Psyr_0413 at 449.053 kb on - strand, within Psyr_0413 at 449.087 kb on + strand, within Psyr_0413 at 449.087 kb on + strand, within Psyr_0413 at 449.087 kb on + strand, within Psyr_0413 at 449.087 kb on + strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413 at 449.088 kb on - strand, within Psyr_0413
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml remove 445,989 + Psyr_0411 0.83 -0.9 446,090 + Psyr_0411 0.85 -1.7 446,157 + Psyr_0411 0.87 -0.3 446,157 + Psyr_0411 0.87 +2.2 446,157 + Psyr_0411 0.87 -1.2 446,157 + Psyr_0411 0.87 -2.3 446,157 + Psyr_0411 0.87 +1.0 446,157 + Psyr_0411 0.87 -1.6 446,158 - Psyr_0411 0.87 -1.3 446,158 - Psyr_0411 0.87 -0.8 446,181 + Psyr_0411 0.87 +0.3 446,182 - Psyr_0411 0.87 +1.3 446,284 - Psyr_0411 0.90 -1.4 446,346 - -1.6 446,346 - +0.6 446,360 + -1.7 446,360 + -1.4 446,360 + -1.8 446,360 + -0.3 446,360 + +1.0 446,360 + +0.6 446,361 - -1.4 446,397 + +0.6 446,397 + +2.5 446,397 + -0.5 446,397 + -0.9 446,398 - +1.0 446,440 - -1.1 446,476 - -0.2 446,566 - +0.3 446,598 + -1.0 446,599 - -2.7 446,599 - +0.0 446,599 - -0.3 446,655 + -1.0 446,655 + -0.4 446,655 + -3.4 446,655 + -1.6 446,656 - -1.2 446,904 + +0.2 446,904 + -0.2 446,905 - -0.1 447,025 + Psyr_0412 0.12 -1.7 447,026 - Psyr_0412 0.12 +0.4 447,094 - Psyr_0412 0.17 -0.1 447,238 + Psyr_0412 0.27 +1.1 447,238 + Psyr_0412 0.27 -2.0 447,238 + Psyr_0412 0.27 -0.2 447,238 + Psyr_0412 0.27 -0.1 447,238 + Psyr_0412 0.27 -0.2 447,239 - Psyr_0412 0.27 +0.4 447,239 - Psyr_0412 0.27 -0.1 447,239 - Psyr_0412 0.27 -0.8 447,239 - Psyr_0412 0.27 -2.4 447,239 - Psyr_0412 0.27 +0.3 447,239 - Psyr_0412 0.27 -0.8 447,239 - Psyr_0412 0.27 -3.3 447,239 - Psyr_0412 0.27 -0.2 447,239 - Psyr_0412 0.27 +0.8 447,559 + Psyr_0412 0.49 -0.3 447,560 - Psyr_0412 0.50 -0.8 447,560 - Psyr_0412 0.50 +0.1 447,560 - Psyr_0412 0.50 +1.4 447,560 - Psyr_0412 0.50 +0.2 447,589 + Psyr_0412 0.52 -2.3 447,589 + Psyr_0412 0.52 -0.2 447,589 + Psyr_0412 0.52 -0.2 447,589 + Psyr_0412 0.52 +1.3 447,589 + Psyr_0412 0.52 -0.8 447,589 + Psyr_0412 0.52 -0.1 447,589 + Psyr_0412 0.52 -2.4 447,589 + Psyr_0412 0.52 -0.4 447,589 + Psyr_0412 0.52 +1.8 447,589 + Psyr_0412 0.52 -0.3 447,589 + Psyr_0412 0.52 -1.2 447,590 - Psyr_0412 0.52 +0.2 447,590 - Psyr_0412 0.52 -1.2 447,590 - Psyr_0412 0.52 -0.4 447,590 - Psyr_0412 0.52 +0.4 447,590 - Psyr_0412 0.52 -1.5 447,590 - Psyr_0412 0.52 -0.6 447,590 - Psyr_0412 0.52 -0.3 447,590 - Psyr_0412 0.52 -0.4 447,590 - Psyr_0412 0.52 +1.2 447,590 - Psyr_0412 0.52 +1.3 447,590 - Psyr_0412 0.52 -0.0 447,590 - Psyr_0412 0.52 +0.8 447,590 - Psyr_0412 0.52 +0.1 447,590 - Psyr_0412 0.52 -0.3 447,590 - Psyr_0412 0.52 -1.6 447,590 - Psyr_0412 0.52 +1.5 447,590 - Psyr_0412 0.52 +1.0 447,595 + Psyr_0412 0.52 -0.6 447,595 + Psyr_0412 0.52 +0.9 447,595 + Psyr_0412 0.52 +1.5 447,595 + Psyr_0412 0.52 +0.7 447,595 + Psyr_0412 0.52 -0.6 447,595 + Psyr_0412 0.52 +0.0 447,595 + Psyr_0412 0.52 -0.7 447,595 + Psyr_0412 0.52 -0.7 447,595 + Psyr_0412 0.52 -2.0 447,595 + Psyr_0412 0.52 +1.4 447,595 + Psyr_0412 0.52 -0.5 447,595 + Psyr_0412 0.52 -0.9 447,596 - Psyr_0412 0.52 -1.0 447,596 - Psyr_0412 0.52 -0.2 447,596 - Psyr_0412 0.52 +0.4 447,596 - Psyr_0412 0.52 +0.4 447,596 - Psyr_0412 0.52 -0.4 447,596 - Psyr_0412 0.52 -0.6 447,596 - Psyr_0412 0.52 -1.1 447,596 - Psyr_0412 0.52 -0.3 447,892 + Psyr_0412 0.73 -0.1 448,144 + +1.4 448,144 + +0.4 448,145 - -0.7 448,145 - -0.5 448,145 - -0.6 448,145 - +0.7 448,221 + -0.6 448,339 + +0.0 448,339 + -0.3 448,340 - +0.9 448,436 - +0.1 448,532 - +0.5 448,532 - +0.1 448,558 + -0.6 448,558 + +0.3 448,558 + +0.2 448,594 + +0.8 448,595 - -0.1 448,927 - -0.6 448,954 + Psyr_0413 0.11 +0.7 448,954 + Psyr_0413 0.11 -0.2 448,954 + Psyr_0413 0.11 +2.1 448,955 - Psyr_0413 0.11 -0.4 448,955 - Psyr_0413 0.11 -1.4 448,955 - Psyr_0413 0.11 +1.0 448,955 - Psyr_0413 0.11 -0.9 448,955 - Psyr_0413 0.11 +1.2 448,955 - Psyr_0413 0.11 +0.0 448,955 - Psyr_0413 0.11 -1.9 448,956 + Psyr_0413 0.11 +0.2 448,956 + Psyr_0413 0.11 +1.5 448,956 + Psyr_0413 0.11 +0.8 448,956 + Psyr_0413 0.11 +2.0 448,956 + Psyr_0413 0.11 -0.4 448,957 - Psyr_0413 0.11 -0.1 448,957 - Psyr_0413 0.11 +2.2 448,957 - Psyr_0413 0.11 -1.6 448,957 - Psyr_0413 0.11 +0.3 449,052 + Psyr_0413 0.14 +0.4 449,052 + Psyr_0413 0.14 -0.2 449,053 - Psyr_0413 0.14 +0.3 449,087 + Psyr_0413 0.15 +0.1 449,087 + Psyr_0413 0.15 +0.3 449,087 + Psyr_0413 0.15 +0.2 449,087 + Psyr_0413 0.15 +0.2 449,088 - Psyr_0413 0.15 -1.5 449,088 - Psyr_0413 0.15 +1.0 449,088 - Psyr_0413 0.15 -0.8 449,088 - Psyr_0413 0.15 +0.0 449,088 - Psyr_0413 0.15 +0.1 449,088 - Psyr_0413 0.15 -0.0 449,088 - Psyr_0413 0.15 -1.4
Or see this region's nucleotide sequence