Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0242

Experiment: KB with Novobiocin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0241 and Psyr_0242 are separated by 47 nucleotidesPsyr_0242 and Psyr_0243 are separated by 81 nucleotidesPsyr_0243 and Psyr_0244 are separated by 116 nucleotides Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141 _0241 Psyr_0242: Psyr_0242 - Protein of unknown function DUF962, at 255,189 to 255,713 _0242 Psyr_0243: Psyr_0243 - cyclic nucleotide-binding protein, at 255,795 to 256,505 _0243 Psyr_0244: Psyr_0244 - extracellular solute-binding protein, family 1, at 256,622 to 257,623 _0244 Position (kb) 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.194 kb on + strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.195 kb on - strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.368 kb on + strand, within Psyr_0241at 254.369 kb on - strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.521 kb on + strand, within Psyr_0241at 254.522 kb on - strand, within Psyr_0241at 254.522 kb on - strand, within Psyr_0241at 254.629 kb on + strand, within Psyr_0241at 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.191 kb on - strandat 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.359 kb on - strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.362 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.520 kb on + strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.653 kb on + strand, within Psyr_0242at 255.654 kb on - strand, within Psyr_0242at 255.673 kb on + strandat 255.674 kb on - strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.718 kb on - strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.838 kb on - strandat 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 256.167 kb on + strand, within Psyr_0243at 256.387 kb on + strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.569 kb on - strandat 256.665 kb on + strandat 256.666 kb on - strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Novobiocin 250 ug/ml
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254,194 + Psyr_0241 0.51 -0.4
254,194 + Psyr_0241 0.51 -0.7
254,194 + Psyr_0241 0.51 -0.3
254,194 + Psyr_0241 0.51 +0.6
254,195 - Psyr_0241 0.51 -0.6
254,195 - Psyr_0241 0.51 +1.1
254,195 - Psyr_0241 0.51 +1.4
254,195 - Psyr_0241 0.51 -3.3
254,195 - Psyr_0241 0.51 +0.7
254,195 - Psyr_0241 0.51 +0.2
254,195 - Psyr_0241 0.51 -0.5
254,368 + Psyr_0241 0.60 -0.4
254,368 + Psyr_0241 0.60 +0.2
254,368 + Psyr_0241 0.60 -1.1
254,368 + Psyr_0241 0.60 -0.3
254,368 + Psyr_0241 0.60 -0.1
254,368 + Psyr_0241 0.60 +0.1
254,369 - Psyr_0241 0.60 +0.3
254,521 + Psyr_0241 0.68 +0.9
254,521 + Psyr_0241 0.68 -0.5
254,521 + Psyr_0241 0.68 +1.4
254,522 - Psyr_0241 0.68 +1.4
254,522 - Psyr_0241 0.68 -2.7
254,629 + Psyr_0241 0.73 -0.8
255,088 + +2.0
255,088 + -0.6
255,088 + -0.9
255,088 + +0.5
255,088 + +0.6
255,089 - +0.6
255,089 - +1.2
255,089 - -0.6
255,190 + +1.4
255,190 + +0.1
255,190 + -0.6
255,190 + +0.1
255,191 - -1.0
255,358 + Psyr_0242 0.32 -0.8
255,358 + Psyr_0242 0.32 +0.1
255,358 + Psyr_0242 0.32 +0.4
255,358 + Psyr_0242 0.32 +0.6
255,359 - Psyr_0242 0.32 +0.2
255,361 + Psyr_0242 0.33 +0.1
255,361 + Psyr_0242 0.33 +0.3
255,362 - Psyr_0242 0.33 +0.2
255,465 - Psyr_0242 0.53 -0.2
255,465 - Psyr_0242 0.53 -1.1
255,520 + Psyr_0242 0.63 -0.8
255,521 - Psyr_0242 0.63 +0.8
255,521 - Psyr_0242 0.63 +0.3
255,521 - Psyr_0242 0.63 +0.5
255,521 - Psyr_0242 0.63 -2.6
255,653 + Psyr_0242 0.88 -0.9
255,654 - Psyr_0242 0.89 +0.9
255,673 + -1.2
255,674 - +0.1
255,714 + -1.7
255,714 + -0.8
255,718 - +0.7
255,760 + -0.1
255,760 + -0.2
255,760 + -0.2
255,760 + +0.1
255,838 - +1.1
255,954 + Psyr_0243 0.22 -1.1
255,954 + Psyr_0243 0.22 -2.6
255,954 + Psyr_0243 0.22 +0.2
255,954 + Psyr_0243 0.22 -2.1
255,954 + Psyr_0243 0.22 +0.2
255,955 - Psyr_0243 0.23 +0.3
255,955 - Psyr_0243 0.23 +0.8
255,955 - Psyr_0243 0.23 -1.8
255,955 - Psyr_0243 0.23 -0.2
255,955 - Psyr_0243 0.23 -0.6
255,955 - Psyr_0243 0.23 -1.4
255,955 - Psyr_0243 0.23 -0.6
256,167 + Psyr_0243 0.52 -1.6
256,387 + Psyr_0243 0.83 -0.3
256,388 - Psyr_0243 0.83 +0.4
256,388 - Psyr_0243 0.83 -0.3
256,569 - -0.2
256,665 + +0.3
256,666 - -0.2
256,706 + -1.2
256,706 + -0.6
256,706 + -1.7
256,706 + +1.9
256,706 + +1.5
256,706 + +0.6
256,706 + +0.4
256,706 + +0.6
256,706 + -0.6
256,706 + -1.2
256,707 - -0.0
256,707 - +1.0
256,707 - +0.6
256,707 - -0.7

Or see this region's nucleotide sequence