Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14530

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,289,858	-		HSERO_RS14520	0.57	-0.0
3,290,111	+				-0.2
3,290,122	+				-0.7
3,290,150	+		HSERO_RS14525	0.17	+0.8
3,290,156	+		HSERO_RS14525	0.19	-0.8
3,290,199	-		HSERO_RS14525	0.32	+0.3
3,290,217	-		HSERO_RS14525	0.38	-0.2
3,290,275	-		HSERO_RS14525	0.56	-0.4
3,290,275	-		HSERO_RS14525	0.56	-0.9
3,290,315	+		HSERO_RS14525	0.69	+1.0
3,290,422	+				+0.4
3,290,574	+				+0.3
3,290,574	+				-0.4
3,290,885	-				-1.0
3,290,922	-		HSERO_RS14530	0.12	-0.5
3,291,069	+		HSERO_RS14530	0.23	-1.2
3,291,125	-		HSERO_RS14530	0.28	-0.6
3,291,238	+		HSERO_RS14530	0.36	-0.3
3,291,289	+		HSERO_RS14530	0.40	+1.0
3,291,335	+		HSERO_RS14530	0.44	-0.1
3,291,371	-		HSERO_RS14530	0.46	-1.3
3,291,641	-		HSERO_RS14530	0.67	-0.8
3,291,731	-		HSERO_RS14530	0.74	-1.1
3,291,731	-		HSERO_RS14530	0.74	-0.1
3,291,742	-		HSERO_RS14530	0.75	-0.4
3,291,956	+				-0.3
3,292,123	+				-0.7
3,292,123	-				+0.6
3,292,177	+				-0.4
3,292,332	-				-0.2
3,292,492	-		HSERO_RS14535	0.16	-0.3
3,292,570	+		HSERO_RS14535	0.19	-0.3
3,292,580	-		HSERO_RS14535	0.19	-0.5
3,292,588	+		HSERO_RS14535	0.20	-1.6
3,292,736	+		HSERO_RS14535	0.25	+1.0
3,292,743	+		HSERO_RS14535	0.26	-0.4
3,292,848	+		HSERO_RS14535	0.30	-0.3
3,292,939	+		HSERO_RS14535	0.33	-0.6
3,292,945	-		HSERO_RS14535	0.34	-2.8
3,292,971	-		HSERO_RS14535	0.35	-0.1
3,292,992	-		HSERO_RS14535	0.35	-0.0